|
|
Title: Synthetic peptides
useful in biological assays for detecting infections caused by group O
HIV-1 viruses
United States Patent: 7,053,175
Issued: May 30, 2006
Inventors: Chenebaux; Denis
Marie Berna (Versailles, FR); Delagneau; Jean-Francois Hubert (La Celle
Saint Cloud, FR); Gadelle; Stephane Jean Xavier (Bievres, FR); Rieunier;
Franc (Fontenay le Fleury, FR)
Assignee: Bio-Rad Pasteur (Marnes
la Coquette, FR)
Appl. No.: 147362
Filed: April 6, 1998
PCT Filed: April 06, 1998
PCT NO: PCT/FR98/00691
371 Date: March 12, 1999
PCT PUB.NO.: WO98/45323
PCT PUB. Date: October 15,
1998
|
|
|
Training Courses -- Pharm/Biotech/etc.
|
Abstract
Synthetic peptides of the monomer type
with 13 to 33 amino acids, in linear form or in a form cyclized by means
of inter-cysteine disulphide bridges, have the general formula (I):
.DELTA.-Z-TrpGlyCys-.THETA.-CysTyrThrSer-.OMEGA. (I) wherein .DELTA. is a
biotinyl radical, a biocytinyl radical, a hydrogen atom, an acetyl
(CH.sub.3CO--) radical, an aliphatic chain which may contain one or two
thiol, an aldehyde functional group, or an amine functional group, Z
represents peptide sequence -.XI..sub.1-Ser-.XI..sub.2-,
-.XI..sub.1-Gln-.XI..sub.2-, or -.XI..sub.1-Asn-.XI..sub.2-, wherein
-.XI..sub.1 represents a peptide sequence of 0 to 9 amino acids and
-.XI..sub.2 represents a peptide sequence of 0 to 5 amino acids, .THETA.
is -Arg Gly Arg Leu Ile-(SEQ ID NO: 15), -Arg Gly Arg Leu Val-(SEQ ID NO:
16), -Arg Gly Lys Leu Ile- (SEQ ID NO: 17), -Arg Gly Lys Leu Val-(SEQ ID
NO: 18), -Lys Gly Arg Leu Ile-(SEQ ID NO: 19), or -Lys Gly Arg Leu Val-(SEQ
ID NO: 20), .OMEGA., attached to the --CO-- group of serine, is a hydroxyl
(--OH) radical, an amino (--NH.sub.2) radical, an alkoxy radical having 1
to 6 carbon atoms, a peptide sequence of formula Val-.SIGMA.-.PSI. wherein
.SIGMA. represents a sequence of formula -(AA.sub.1)-Trp Asn-(AA.sub.2)-(AA.sub.3)
wherein (AA.sub.1) represents an amino acid different from lysine,
(AA.sub.2) represents an amino acid, and (AA.sub.3) is serine or a
threonine residue, and .PSI., attached to the --CO-- residue of the free
AA.sub.3 amino acid, is OH, NH.sub.2, or an alkoxy radical having from 1
to 6 carbon atoms, and a peptide sequence of formula -Val-.PSI. wherein .PSI.,
attached to the --CO-- residue of valine, is OH, NH.sub.2, or an alkoxy
radical having from 1 to 6 carbon atoms.
Description of the Invention
The invention relates to synthetic
peptides which can be used in biological tests for the detection of
infections due to the group O HIV-1 viruses, to the method for preparing
them, to compositions and kits containing such peptides and to the
biological tests using such peptides.
Group O HIV-1 retroviruses are known in the prior art. Patent EP 0,345,375
and patent application EP 0,657,532 describe the ANT 70 and ANT 70 NA
isolates isolated from Cameroonian patients. These documents describe more
precisely antigens and antigenic compositions containing lysates or
proteins of these isolates, the nucleic acids corresponding to the genomic
RNA, hybridization method using these nucleic acids, methods of producing
the isolates indicated above as well as methods of preparing p12, p16,
p25, gp41 and gp120 proteins of these retroviruses.
Application EP 0,591,914 describes the MVP 5180/91 isolate. This isolate,
characterized by Western blotting, exhibits, like the previous isolate,
differences in relation to the HIV-1 retrovirus isolates which have been
known for a long time. Application EP 0,591,914 describes precisely the
DNA sequence of the MVP 5180/91 isolate and indicates precisely the
location of the gag, pol and env genes. Application EP 0,591,914 further
describes synthetic peptides of the V3 loop as well as the immunodominant
region (gp41). They are useful for biological tests, in particular for the
in vitro detection of group O HIV-1 antibodies.
Application EP 0,673,948 describes synthetic or recombinant peptides
consisting of 15 to 50 amino acids (AA) and comprising the sequence -VWGIRQLRARLQALETLIQNQQRLNLWGXKGKLIXYTSVKWNTSWSGR-(SEQ
ID NO:22) in which X represents either a cysteine residue, or a serine
residue. These peptides are useful in the diagnostic field for the
detection of infections due to certain group O HIV-1 retrovirus isolates.
Application EP 0,727,483 is also known which describes the MVP 2901/94
isolate which also forms part of the retroviruses belonging to the group O
HIV-1 family. This application describes certain antigens having
well-determined peptide sequences. These peptide sequences correspond to
part of the sequence of gp120 and part of gp41 (immunodominant region) of
the MVP 2901/94 isolate.
Application WO 96/12809 describes two new isolates belonging to the group
O HIV-1 family. They are the VAU and DUR isolates. This application
describes certain peptide sequences derived from the two viruses cited
above, which are useful for the detection of antibodies recognizing the
HIV-1 VAU or DUR peptide sequences.
Application WO 96/32293 describes two antigens derived from the sequence
of the ANT 70 isolate. They are the antigen called MDL061 and the antigen
MDL056, of the immunodominant region of gp41. According to this invention,
to detect 100% of the samples of a limited collection of sera from
patients infected with the group O HIV-1 virus, it is necessary to use
compositions containing these two peptides, since each isolated peptide
does not allow, on its own, satisfactory results to be obtained.
Indeed, it is practically impossible, in the light of the genetic
variability shown by the isolates of the group O virus, to guarantee
serological screening of individuals infected by the use of antigens
derived from the same and sole isolate. This means that it is not possible
to obtain reagents which guarantee 100% sensitivity. The 0 group thus
raises, for the first time, a major problem; it is the inability of
certain serological reagents to recognize individuals infected with
particularly divergent groups or subtypes. This is precisely the case for
the group O HIV-1 viruses.
Application WO 96/40763 also stresses the great divergence of the O group.
This application describes peptides which incorporate, into a natural
HIV-1 type B sequence, a few minor modifications (replacement of one or
two amino acids). According to this application, these hybrid peptides are
capable of reacting with anti-group O antibodies.
Application WO 96/27013 describes a series of new group O HIV-1 viruses
designated BCF 01, BCF 02, BCF 03, BCF06, BCF 07, BCF 08, BCF09, BCF11,
BCF12, BCF13 and BCF14 as well as a series of peptides of the
corresponding gp41 dominant region which are called ESS/BCF02, FAN/BCF01,
LOB/BCF06, MAN/BCF07, NKO/BCF08, POC/BCF03, NAN/BCF11, BCF09, BCF12, BCF13
and BCF14. A number of these peptides are difficult to handle in diagnosis
because of their low solubility, especially the peptide BCF13.
Unexpectedly, it has now been found that certain synthetic peptides are
diagnostic reagents of superior quality and they make it possible to
satisfactorily screen patients infected with group O HIV-1 retroviruses.
These peptides are composed of variable sequences articulated around
highly conserved short sequences, which are present in isolates of the
group O HIV-1 retroviruses. The peptides of the invention make it possible
to obtain results which are quite superior to those obtained with
synthetic peptides carrying immunodominant epitopes of the gp41 (env) of
certain group O HIV-1 isolates.
Subsequently, to name the amino acids, the three-letter nomenclature will
be used.
The synthetic peptides of the invention correspond to the general formula
(I): (various regions of SEQ ID NOS 1-16, respectively) .DELTA.-Z-TrpGlyCys-.THETA.-CysTyrThrSer-.OMEGA.
(I) in which: .DELTA. represents a biotinyl radical, a biocytinyl radical,
a hydrogen atom, an acetyl (CH.sub.3CO--) radical, an aliphatic chain
which may contain one or two thiol, aldehyde or amine functional groups,
the aliphatic chain preferably being an alkyl chain of 1 to 6 carbon atoms
or an alkenyl chain of 2 to 6 carbon atoms, or an aminoalkylcarbonyl chain
of 2 to 6 carbon atoms, Z represents a peptide sequence of one of the
formulae (II) to (X): -.XI..sub.1Ser-.XI..sub.2- (II) -Ser-.XI..sub.2-
(III) -.XI..sub.1-Ser- (IV) -.XI..sub.1-Gln-.XI..sub.2- (V) -Gln-.XI..sub.2-
(VI) -.XI..sub.1-Gln- (VII) -.XI..sub.1-Asn-.XI..sub.2- (VIII) -Asn-.XI..sub.2-
(IX) -.XI..sub.1-Asn- (X) in which: .XI..sub.1 represents a peptide
sequence of 0 to 9 amino acids and .XI..sub.2 represents a peptide
sequence of 0 to 5 amino acids, .THETA. represents a peptide sequence of
formula (XI): -(AA.sub.1)-(AA.sub.2)-(AA.sub.3)-(AA.sub.4)-(AA.sub.5)-
(XI) in which: (AA.sub.1) represents either a lysine residue, or an
arginine residue, or an ornithine residue, (AA.sub.2) represents either a
glycine residue, or an asparagine residue, (AA.sub.3) represents either a
lysine residue, or an arginine residue, or an ornithine residue,
(AA.sub.4) represents either a leucine residue, or an alanine residue, or
an isoleucine residue, or a glutamine residue, (AA.sub.5) represents
either an isoleucine residue, or a valine residue, or a leucine residue,
or a threonine residue, or a norleucine residue, or a norvaline residue,
provided, however, that (AA.sub.1), (AA.sub.2), (AA.sub.3), (AA.sub.4) and
(AA.sub.5) never form together the peptide sequences -Lys Gly Lys Leu
Ile-(SEQ ID NO: 17) and -Lys Gly Lys Leu Val-(SEQ ID NO: 18), .OMEGA.,
attached to the --CO-- group of serine, represents: a hydroxyl (--OH)
radical or an amino (--NH.sub.2) radical, an alkoxy radical comprising
from 1 to 6 carbon atoms, a peptide sequence of formula (XII):
-Val-.SIGMA.-.PSI. (XII) in which .SIGMA. represents a sequence of formula
(XIII) or of formula (XIV): -(AA.sub.6)-Trp Asn-(AA.sub.7)-(AA.sub.8)
(XIII) -(AA.sub.6)-Trp His-(AA.sub.7)-(AA.sub.8) (XIV) in which:
(AA.sub.6) represents an amino acid different from lysine, (AA.sub.7)
represents an amino acid, (AA.sub.8) represents a serine or threonine
residue, and .PSI., attached to the --CO-- residue of the free AA.sub.8
amino acid, represents an OH or NH.sub.2 group or an alkoxy radical
comprising from 1 to 6 carbon atoms, a peptide sequence of formula (XV):
-Val-.PSI. (XV) in which .PSI., attached to the --CO-- residue of valine,
has the same meaning as for the formula (XII), or a peptide sequence of
one of the formulae (XVI) to (XVIII): (Varous regions of SEQ ID NOS 1-16,
respectively) -Z-TrpGlyCys-.THETA.-CysTyrThrSer-.PSI. (XVI) Val-.SIGMA.-Z-TrpGlyCys-.THETA.-CysTyrThrSerVal-.SIGMA.-.PSI.
(XVII) Val-Z-TrpGlyCys-.THETA.-CysTyrThrSerVal-.PSI. (XVIII) in which Z
and .THETA. have the definition given for the formula (I) and .SIGMA. has
the definition given for the formula (XII) and .PSI., attached to the
--CO-- residue of serine, on the --CO-- residue of the AA.sub.8 amino acid
or on the --CO-- residue of valine, has the same meaning as for the
formula (XII).
When .OMEGA. represents a peptide sequence of one of the formulae (XVI) to
(XVIII), the peptide of formula (I) becomes a dimer whose size may vary
from 26 to 66 amino acids. When .OMEGA. does not represent a peptide
sequence of one of the formulae (XVI) to (XVIII), the peptides of formula
(I) are of the monomeric type and their size may vary from 13 to 33 amino
acids.
The peptides according to the invention may be either in a linear form, or
in a form cyclized by means of inter-cysteine disulphide bridges.
The compounds of formula (I) in which (AA.sub.5) represents either a
valine residue, or a leucine residue, or a threonine residue are
preferred, and when .OMEGA. corresponds to a peptide sequence of formula
(XII), (AA.sub.6) represents either a glutamine residue or an arginine
residue.
The peptides of formula (I) are preferred in which: .DELTA. represents a
biotinyl radical, a hydrogen atom or an aliphatic chain which may contain
one or two thiol, aldehyde or amine functional groups, the aliphatic chain
preferably being an alkyl chain of 1 to 6 carbon atoms, or an
aminoalkylcarbonyl chain of 2 to 6 carbon atoms, Z represents a peptide
sequence of formula (II) or (V), in which .XI..sub.1 represents a peptide
sequence of two amino acids and .XI..sub.2 represents an amino acid, or a
sequence of formula (IV), in which .XI..sub.1 represents three amino
acids, or a peptide sequence of formula (VIII), in which .XI..sub.1
represents a peptide sequence of nine, eight or three amino acids and
.XI..sub.2 a peptide sequence of five amino acids, .THETA. represents a
peptide sequence of formula: -Lys Gly Arg Leu Val-(various regions of SEQ
ID NOS, 3, 4, 5, 9, 10, 15 & 16, respectively), -Arg Gly Lys Ala
Val-(various regions of SEQ ID NOS 1 & 6, respectively), -Arg Gly Arg Leu
Val-(various regions of SEQ ID NOS, 2, 8, 11, 12, & 13, respectively), or
-Arg Gly Arg Ala Val-(a region of SEQ ID NO: 14), and .OMEGA. represents a
hydroxyl group, the peptide sequence (XV) or one of the following
sequences which correspond to the peptide sequence of formula (XII): -Val
Arg Trp Asn Glu Thr-.PSI.(various regions of SEQ ID NOS 11, 12, & 13,
respectively) -Val Gln Trp Asn Glu Thr-.PSI.(various regions of SEQ ID NOS,
1, 2, 3, 6, 9, & 8, respectively) or -Val Gln Trp Asn Ser
Thr-.PSI.(various regions of SEQ ID NOS 4, & 5, respectively).
Preferably, Z represents a peptide sequence of formula: -Leu Leu Ser
Ser-(various regions of SEQ ID NOS 3, 4, 8 & 9, respectively) -Leu Leu Asn
Ser-(various regions of SEQ ID NOS 6, 10, 11, 14, 15, & 20, respectively)
-Leu Leu Gln Ser-(a region of SEQ ID NO: 5) -Arg Leu Asn Ser-(a region of
SEQ ID NO:16) -Ala Leu Glu Thr Leu Leu Gln Asn Gln Gln Leu Leu Asn Ser-(a
region of SEQ ID:11) -Ala Leu Glu Thr Leu Leu Gln Asn Gln Gln Leu Leu Asp
Leu-(a region of SEQ ID NO: 13) -Ala Leu Glu Thr Leu Leu Gln Asn Gln Gln
Leu Leu Asn Ile-(a region of SEQ ID NOS 14, 15 & 20, respectively) -Leu
Asn Gln Gln Arg Leu Leu Asn Ser-(a region of SEQ ID NOS 14, 15% 20,
respectively) or -Arg Ala Leu Glu Thr Leu Leu Asn Gln Gln Arg Leu Leu Asn
Ser-(a region of SEQ ID: 15)
Also forming part of the invention are the synthetic peptides comprising
from 20 to 50 amino acids and corresponding to the formula (Ia): (various
regions of SEQ ID NOS 1-16, respectively) .DELTA.-Z.sub.a-TrpGlyCys-.THETA.-CysTyrThrSer-.OMEGA..sub.a
(Ia) in which Z.sub.a represents a radical of formulae IIa to Xa:
.XI..sub.1a-Ser-.XI..sub.2a (IIa) -Ser-.XI..sub.2a (IIIa) -.XI..sub.1a-Ser
(IVa) .XI..sub.1a-Gln-.XI..sub.2a (Va) -Gln-.XI..sub.2a (VIa)
.XI..sub.1a-Gln- (VIIa) .XI..sub.1a-Asn-.XI..sub.2a (VIIIa) -Asn-.XI..sub.2a
(IXa) -.XI..sub.1a-Asn (Xa) in which: -.XI..sub.1a represents a peptide
sequence of 1 to 5 amino acids and -.XI..sub.2a an amino acid, -.OMEGA..sub.a
represents a peptide sequence of formula (XII), as defined for the formula
(I), or a peptide sequence of formula (XVIIa): (various regions of SEQ ID
NOS 1-16, respectively) Val-.SIGMA.-Z.sub.a-TrpGlyCys-.THETA.-CysTyrThrSerVal-.SIGMA.-.PSI.
(XVIIa) in which Z.sub.a has the meaning given for the formula (Ia) and
.DELTA., .THETA., .SIGMA. and .PSI. have the same meaning as for the
formula (I):
The peptides of formula (I) or (Ia) including one of the following
sequences (these peptides may be of the dimer type or of the monomer type
as defined above) are preferred. The sequences are given according to the
one- and three-letter nomenclatures:
TABLE-US-00001 (SEQ ID NO: 1) -LLSLWGCRGKAVCYTSVQWNET- or -Leu Leu Ser Leu
Trp Gly Cys Arg Gly Lys Ala Val Cys Tyr Thr Ser Val Gln Trp Asn 1 5 10 15
20 Glu Thr- 22 (SEQ ID NO: 2) -LLSLWGCRGRLVCYTSVQWNET- or -Leu Leu Ser Leu
Trp Gly Cys Arg Gly Arg Leu Val Cys Tyr Thr Ser Val Gln Trp Asn 1 5 10 15
20 Glu Thr- 22 (SEQ ID NO: 3) -LLSSWGCKGRLVCYTSVQWNET- or -Leu Leu Ser Ser
Trp Gly Cys Lys Gly Arg Leu Val Cys Tyr Thr Ser Val Gln Trp Asn 1 5 10 15
20 Glu Thr- 22 (SEQ ID NO: 4) -LLSSWGCKGRLVCYTSVQWNST- or -Leu Leu Ser Ser
Trp Gly Cys Lys Gly Arg Leu Val Cys Tyr Thr Ser Val Gln Trp Asn 1 5 10 15
20 Ser Thr- 22 (SEQ ID NO: 5) -LLQSWGCKGRLVCYTSVQWNST- or -Leu Leu Gln Ser
Trp Gly Cys Lys Gly Arg Leu Val Cys Tyr Thr Ser Val GIn Trp Asn 1 5 10 15
20 Ser Thr- 22 (SEQ ID NO: 6) -LLNSWGCRGKAVCYTSVQWNET- or -Leu Leu Asn Ser
Trp Gly Cys Arg Gly Lys Ala Val Cys Tyr Thr Ser Val Gln Trp Asn 1 5 10 15
20 Glu Thr- 22 (SEQ ID NO: 7) -LLSLWGCRGRAVCYTSVQWNET- or -Leu Leu Ser Leu
Trp Gly Cys Arg Gly Arg Ala Val Cys Tyr Thr Ser Val Gln Trp Asn 1 5 10 15
20 Glu Thr- 22 (SEQ ID NO: 8) -LLSSWGCRGRLVCYTSVQWNET- or -Leu Leu Ser Ser
Trp Gly Cys Arg Gly Arg Leu Val Cys Tyr Thr Ser Val Gln Trp Asn 1 5 10 15
20 Glu Thr- 22 (SEQ ID NO: 9) -LLSSWGCKGRLVCYTS- or -Leu Leu Ser Ser Trp
Gly Cys Lys Gly Arg Leu Val Cys Tyr Thr Ser- 1 5 10 15 (SEQ ID NO: 10) -LLNSWGCKGRLVCYTS-
or -Leu Leu Asn Ser Trp Gly Cys Lys Gly Arg Leu Val Cys Tyr Thr Ser- 1 5
10 15 (SEQ ID NO: 11) -ALETLLQNQQLLNSWGCRGRLVCYTSVRWNET- or -Ala Leu Glu
Thr Leu Leu Gln Asn Gln Gln Leu Leu Asn Ser Trp Gly Cys Arg Gly 1 5 10 15
Arg Leu Val Cys Tyr Thr Ser Val Arg Trp Asn Glu Thr- 20 25 30 (SEQ ID NO:
12) -ALETLLQNQQLLNIWGCRGRLVCYTSVRWNET- or -Ala Leu Glu Thr Leu Leu Gln Asn
Gln Gln Leu Leu Asn Ile Trp Gly Cys Arg Gly 1 5 10 15 Arg Leu Val Cys Tyr
Thr Ser Val Arg Trp Asn Glu Thr- 20 25 30 (SEQ ID NO: 13) -ALETLLQNQQLLDLWGCRGRLVCYTSVRWNET-
or -Ala Leu Glu Thr Leu Leu Gln Asn Gln Gln Leu Leu Asp Leu Trp Gly Cys
Arg Gly 1 5 10 15 Arg Leu Val Cys Tyr Thr Ser Val Arg Trp Asn Glu Thr- 20
25 30 (SEQ ID NO: 14) -LNQQRLLNSWGCKGRLVCYTSV- or -Leu Asn Gln Gln Arg Leu
Leu Asn Ser Trp Gly Cys Lys Gly Arg Leu Val Cys Tyr 1 5 10 15 Thr Ser Val-
20 (SEQ ID NO: 15) -RALETLLNQQRLLNSWGCKGRLVCYTSV- or -Arg Ala Leu Glu Thr
Leu Leu Asn Gln Gln Arg Leu Leu Asn Ser Trp Gly Cys Lys 1 5 10 15 Gly Arg
Leu Val Cys Tyr Thr Ser Val- 20 25 (SEQ ID NO: 16) -RLNSWGCKGRLVCYTSV- or
-Arg Leu Asn Ser Trp Gly Cys Lys Gly Arg Leu Val Cys Tyr Thr Ser Val- 1 5
10 15 PEPTIDE No. 1 (2B): SEQ ID NO: 1 LLSLWGCRGKAVCYTSVQWNET or Leu Leu
Ser Leu Trp Gly Cys Arg Gly Lys Ala Val Cys Tyr Thr Ser Val Gln Trp Asn 1
5 10 15 20 Glu Thr 22 PEPTIDE No. 2 (3B): SEQ ID NO: 2
LLSLWGCRGRLVCYTSVQWNET or Leu Leu Ser Leu Trp Gly Cys Arg Gly Arg Leu Val
Cys Tyr Thr Ser Val Gln Trp Asn 1 5 10 15 20 Glu Thr 22 PEPTIDE No. 3
(4B): SEQ ID NO: 3 LLSSWGCKGRLVCYTSVQWNET or Leu Leu Ser Ser Trp Gly Cys
Lys Gly Arg Leu Val Cys Tyr Thr Ser Val Gln Trp Asn 1 5 10 15 20 Glu Thr
22 PEPTIDE No. 4 (5B): SEQ ID NO: 4 LLSSWGCKGRLVCYTSVQWNST or Leu Leu Ser
Ser Trp Gly Cys Lys Gly Arg Leu Val Cys Tyr Thr Ser Val Gln Trp Asn 1 5 10
15 20 Ser Thr 22 PEPTIDE No. 5 (6B): SEQ ID NO: 5 LLQSWGCKGRLVCYTSVQWNST
or Leu Leu Gln Ser Trp Gly Cys Lys Gly Arg Leu Val Cys Tyr Thr Ser Val Gln
Trp Asn 1 5 10 15 20 Ser Thr 22 PEPTIDE No. 6: SEQ ID NO: 6
LLNSWGCRGKAVCYTSVQWNET or Leu Leu Asn Ser Trp Gly Cys Arg Gly Lys Ala Val
Cys Tyr Thr Ser Val Gln Trp Asn 1 5 10 15 20 Glu Thr 22 PEPTIDE No. 7: SEQ
ID NO: 7 LLSLWGCRGRAVCYTSVQWNET or Leu Leu Ser Leu Trp Gly Cys Arg Gly Arg
Ala Val Cys Tyr Thr Ser Val Gln Trp Asn 1 5 10 15 20 Glu Thr 22 PEPTIDE
No. 8 (7B): SEQ ID NO: 8 LLSSWGCRGRLVCYTSVQWNET or Leu Leu Ser Ser Trp Gly
Cys Arg Gly Arg Leu Val Cys Tyr Thr Ser Val Gln Trp Asn 1 5 10 15 20 Glu
Thr 22 PEPTIDE No. 9 (12B): SEQ ID NO: 9 LLSSWGCKGRLVCYTS or Leu Leu Ser
Ser Trp Gly Cys Lys Gly Arg Leu Val Cys Tyr Thr Ser 1 5 10 15 PEPTIDE No.
10 (14B): SEQ ID NO: 10 LLNSWGCKGRLVCYTS or Leu Leu Asn Ser Trp Gly Cys
Lys Gly Arg Leu Val Cys Tyr Thr Ser 1 5 10 15 PEPTIDE No. 11 (18B): SEQ ID
NO: 11 ALETLLQNQQLLNSWGCRGRLVCYTSVRWNET or Ala Leu Glu Thr Leu Leu Gln Asn
Gln Gln Leu Leu Asn Ser Trp Gly Cys Arg Gly 1 5 10 15 Arg Leu Val Cys Tyr
Thr Ser Val Arg Trp Asn Glu Thr 20 25 30 PEPTIDE No. 12 (19B): SEQ ID NO:
12 ALETLLQNQQLLNIWGCRGRLVCYTSVRWNET or Ala Leu Glu Thr Leu Leu Gln Asn Gln
Gln Leu Leu Asn Ile Trp Gly Cys Arg Gly 1 5 10 15 Arg Leu Val Cys Tyr Thr
Ser Val Arg Trp Asn Glu Thr 20 25 30 PEPTIDE No. 13 (20B): SEQ ID NO: 13
ALETLLQNQQLLDLWGCRGRLVCYTSVRWNET or Ala Leu Glu Thr Leu Leu Gln Asn Gln
Gln Leu Leu Asp Leu Trp Gly Cys Arg Gly 1 5 10 15 Arg Leu Val Cys Tyr Thr
Ser Val Arg Trp Asn Glu Thr 20 25 30 PEPTIDE No. 14 (21B): SEQ ID NO: 14
LNQQRLLNSWGCKGRLVCYTSV or Leu Asn Gln Gln Arg Leu Leu Asn Ser Trp Gly Cys
Lys Gly Arg Leu Val Cys Tyr 1 5 10 15 Thr Ser Val 20 PEPTIDE No. 15 (22B):
SEQ ID NO: 15 RALETLLNQQRLLNSWGCKGRLVCYTSV or Arg Ala Leu Glu Thr Leu Leu
Asn Gln Gln Arg Leu Leu Asn Ser Trp Gly Cys Lys 1 5 10 15 Gly Arg Leu Val
Cys Tyr Thr Ser Val 20 25 PEPTIDE No. 16 (23B): SEQ ID NO: 16
RLNSWGCKGRLVCYTSV or Arg Leu Asn Ser Trp Gly Cys Lys Gly Arg Leu Val Cys
Tyr Thr Ser Val 1 5 10 15
The synthetic peptides of formula (I), which are the subject of the
present invention, can be obtained by solid phase synthesis according to
conventional methods: R. B. Merrifield, J. Amer. Chem. Soc. (1963), 85,
pp. 2149-2154; R. C. Sheppard, in "Peptides 1971", Nesvadba H. (ed.) North
Holland, Amsterdam, pp. 111; E. Atherton and R. L. Sheppard, in "Solid
phase peptide synthesis, a practical approach", IRL PRESS, (1989), Oxford
University Press, pp. 25-34. As automatic synthesizer, it is possible to
use the synthesizer "9050 Plus Pep Synthesizer" from Millipore or an
equivalent synthesizer.
The solid support used for the syntheses should be compatible with the
technique and the chemistry used. For example, for a synthesis on the
synthesizer "9050 Plus pep. Synthesizer", it is recommended to use a resin
suitable for the so-called "continuous flow" technique; the PEG PS resins
meet these criteria. These supports consist of an arm ("spacer") based on
polyethylene glycol (PEG) situated between the functional group of the
polystyrene beads and the point of attachment of the first amino acid. The
nature of this point of anchorage may vary according to the C-terminal
functional group chosen. In the present case, various PEG-PS resins were
used.
The starting resin and the amino acids used as raw materials are products
which are commercially available (PerSeptive-Biosystem, or Neosystem).
For the peptide synthesis, the following side chain protecting groups were
used:
TABLE-US-00002 Amino acids Protecting group Arginine
Pentamethyl-2,2,4,6,7-dihydrobenzofuran-5- sulphonyl (Pbf) Asparagine,
Glutamine Trityl (Trt) Cysteine Trityl (Trt) or Acetamidomethyl (Acm)
Serine, Threonine, tert-Butyl ether (tBu) Tyrosine Lysine, Tryptophan
tert-Butyloxycarbonyl (Boc)
The temporary protection of the primary amine functional group at the
.alpha. position of the amino acids which is used is the
9-fluorenylmethyloxylcarbonyl (Fmoc) group. The deprotection is carried
out with a 20% solution of piperidine in dimethylformamide.
For the coupling, an excess of diisopropylcarbodiimide (DIPCDI) and
1-hydroxybenzotriazole (HOBt) is preferably used.
After synthesis, the resin is washed with organic solvents (dimethylformamide,
followed by dichloromethane), dried under vacuum and then treated with a
trifluoroacetic acid (TFA)-based solution cooled to 0.degree. C. and
containing appropriate "scavengers". There may be used, for example, the K
reagent containing 82% of trifluoroacetic acid, 5% of phenol, 5% of water,
5% of thioanisole and 3% of ethanedithiol.
After filtration of the resin, the synthetic peptides are precipitated and
rinsed with ether.
The synthetic peptides are then purified by reversed phase liquid
chromatography and their purity is determined by mass spectrometry. As
solid phase, it is possible to use, for example, the Bondapak C-18 phase.
The peptides are eluted by forming a linear gradient between two buffer
solutions, the first which is essentially aqueous (for example water-TFA
0.1%) and the second which is rather organic (for example a mixture
containing 60% acetonitrile, 39.92% water and 0.08% TFA). The pure
fractions collected are combined, concentrated under vacuum and
freeze-dried.
For the cyclization, the purified synthetic peptides are dissolved in an
ammonium acetate solution (10 mM). The pH is adjusted to 8.5 by addition
of 1 M ammonium hydroxide. The solution is vigorously stirred. The
cyclization is complete after 18 hours. The pH is then reduced to 6 by
addition of acetic acid. The cyclized peptides are freeze-dried and then
purified by reversed phase liquid chromatography as described above.
The immunoreactivity of the peptides of the invention was evaluated with
the aid of sera from patients predominantly of Cameroonian origin infected
with group O HIV-1 retroviruses. The various tests carried out
demonstrated that the peptides of the invention, alone or in combination
(compositions of peptides), make it possible to detect 100% of the sera
infected with group O HIV-1 retroviruses.
The synthetic peptides of the invention therefore find application in
immunological tests for the screening of infections due to group O HIV-1
retroviruses. It is also possible to use combinations of several synthetic
peptides of formula I. These combinations, which may contain two or more
peptides of formula I, also form part of the invention. Combinations
containing peptides No. 1 (2B) and No.3 (4B) are preferred.
It is also possible to use synthetic peptides of formula (I) of the
present invention in combination with group O HIV-1 recombinant peptides
(recombinant proteins) as can be obtained by conventional methods and
having the sequences described, for example in application EP 0,591,914.
Such compositions are also within the scope of the present invention.
The synthetic peptides of the invention can also be used in combination
with other HIV-2 and/or HIV-1 recombinant (recombinant proteins) or
synthetic peptides, such as the peptides described in patent applications
or patents EP 0,387,914, EP 0,239,425, EP 0,220,273 or EP 0,267,802. This
list of patent applications or patents is not exhaustive and is given by
way of example.
The compositions containing one or more synthetic peptides of formula (I)
and one or more HIV-1 or HIV-2 recombinant or synthetic peptides find
application in diagnosis for the screening of patients infected with
various HIV retroviruses. These compositions also form part of the present
invention.
Immunoassay methods using one or more synthetic peptides of formula (I),
alone or in combination with group O HIV-1 recombinant peptides or HIV-1
and/or HIV-2 recombinant or synthetic peptides, also form part of the
invention.
The invention also relates to kits, for carrying out immunoassays, which
include a peptide of formula (I) or a composition which contains at least
one peptide of formula (I).
Claim 1 of 11 Claims
1. Synthetic peptides in linear form, or
cyclized by means of inter-cysteine disulphide bridges, having the general
formula (I): .DELTA.-Z-Trp Gly Cys (residues 5 to 7 of SEQ ID NO:
1)-.THETA.-Cys Tyr Thr Ser (residues 13 to 16 of SEQ ID NO: 1)-.OMEGA. (I)
wherein: .DELTA. is selected from the group consisting of a biotinyl
radical, a biocytinyl radical, a hydrogen atom, an acetyl (CH.sub.3CO--)
radical, an aliphatic chain which may contain one or two thiol, an
aldehyde functional group and an amine functional group, Z is a peptide
sequence selected from the group consisting of: Leu Leu Ser Ser (residues
1 to 4 of SEQ ID NO: 3), Leu Leu Asn Ser (residues 1 to 4 of SEQ ID NO:
6), Arg Leu Asn Ser (residues 1 to 4 of SEQ ID NO: 16), Ala Leu Glu Thr
Leu Leu Gln Asn Gln Gln Leu Leu Asn Ser (residues 1 to 14 of SEQ ID NO:
11), Ala Leu Glu Thr Leu Leu Gln Asn Gln Gln Leu Leu Asp Leu (residues 1
to 14 of SEQ ID NO: 13), Ala Leu Glu Thr Leu Leu Gln Asn Gln Gln Leu Leu
Asn Ile (residues 1 to 14 of SEQ ID NO: 12), Leu Asn Gln Gln Arg Leu Leu
Asn Ser (residues 1 to 9 of SEQ ID NO: 14), and Arg Ala Leu Glu Thr Leu
Leu Asn Gln Gln Arg Leu Leu Asn Ser (residues 1 to 15 of SEQ ID NO: 15),
.THETA. is a peptide sequence selected from the group consisting of: Arg
Gly Arg Leu Val (residues 8 to 12 of SEQ ID NO: 2), Arg Gly Lys Leu Ile (SEQ
ID NO: 17), Arg Gly Lys Leu Val (SEQ ID NO: 18), and Lys Gly Arg Leu Val
(residues 8 to 12 of SEQ ID NO: 3), .OMEGA., attached to the --CO-- group
of Ser, is selected from the group consisting of: a hydroxyl group and a
peptide sequence of formula Val-.PSI., Val Arg Trp Asn Glu
Thr-.PSI.(residues 27-32 of SEQ ID NO: 11), Val Gln Trp Asn Glu
Thr-.PSI.(residues 27 to 32 of SEQ ID NO: 1), and Val Gln Trp Asn Ser
Thr-.PSI.(residues 27 to 32 of SEQ ID NO: 4), wherein .PSI., attached to
the --CO-- residue of Val or Thr, is selected from the group consisting of
a OH group, a NH.sub.2 group, and an alkoxy radical comprising from 1 to 6
carbon atoms.
____________________________________________
If you want to learn more
about this patent, please go directly to the U.S.
Patent and Trademark Office Web site to access the full
patent.
|