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Title: Collagen-binding
proteins from Streptococcus pyogenes
United States Patent: 7,169,902
Issued: January 30, 2007
Inventors:
Podbielski; Andreas, N/A (D-89081 Ulm, DE)
Appl. No.: 10/854,191
Filed: May 27, 2004
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George Washington University's Healthcare MBA
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Abstract
Isolated proteins, designated Cpa1 and
Cpa49, and their corresponding amino acid and nucleic acid sequences are
provided which are useful in the prevention and treatment of infection
caused by group A streptococcal bacteria such as Streptococcus pyogenes.
These proteins have been observed to bind to collagen, and thus methods
are provided, such as by administration of the proteins or antibodies
generated thereto, whereby streptococcal binding of collagen can be
inhibited, and streptococcal infection can be greatly reduced. In
addition, medical instruments can be treated using the collagen-binding
proteins of the invention in order to reduce or eliminate the possibility
of their becoming infected or further spreading the infection. In
particular, the proteins are advantageous because they may be used as
vaccine components or antibodies thereof, and they may be administered to
wounds or used to coat biomaterials in order to act as collagen blocking
agents and reduce or prevent severe infection by group A streptococcal
bacteria.
SUMMARY OF THE
INVENTION
Accordingly, it is an object of the
present invention to provide isolated proteins (adhesins) from group A
streptococci which can bind to intercellular matrix proteins such as
collagen so as to be useful in developing methods of inhibiting collagen
binding and attachment of streptococcal bacteria to cells.
It is a further object of the present invention to provide isolated
streptococcal surface proteins that are able to inhibit adhesion to the
immobilized extracellular matrix or host cells present on the surface of
implanted biomaterials.
It is a further object of the present invention to provide a vaccine which
can be used in treating or preventing infection by group A streptococcal
bacterial such as Streptococcus pyogenes.
It is still further an object of the present invention to generate
antisera and antibodies to the collagen binding proteins from GAS which
can also be useful in developing methods of treatment which can inhibit
binding of the streptococcal bacteria to host cells or to implanted
biomaterials and thus be employed in order to treat or prevent
Streptococcal infection.
It is a further object of the present invention to provide improved
materials and methods for detecting and differentiating collagen-binding
proteins in streptococcal organisms in clinical and laboratory settings.
It is a further object of the invention to provide nucleic acid sequences
which code for the collagen binding proteins in GAS which can also be
useful in producing the collagen-binding proteins of the invention and in
developing probes and primers specific for identifying and characterizing
these proteins.
These and other objects are provided by virtue of the present invention
which comprises isolated collagen binding proteins from group A
streptococcal bacteria such as Streptococcus pyogenes along with their
amino acid and nucleic acid sequences. Two of the specific proteins
isolated in accordance with the invention are designated Cpa1 and Cpa49
which are obtained from the collagen binding region in Streptococcus
pyogenes, and the sequences for those proteins are those as shown in SEQ
ID NOS. 2 and 4, respectively. The nucleic acid sequences coding for Cpa1
and Cpa49 are shown in SEQ ID NOS. 1 and 3, respectively. The isolated
proteins of the present invention have been observed to bind to collagen,
and thus can be utilized in methods of treating or preventing
streptococcal infection through the inhibition of the ability of the
bacteria to bind to collagen.
In another aspect of the present invention, there is also provided
antisera and antibodies generated against the collagen binding proteins of
the present invention which also can be utilized in methods of treatment
which involve inhibition of the attachment of the Cpa proteins to
collagen. In particular, specific polyclonal antiserum against Cpa has
been generated which has been shown to react with Cpa in Western
immunoblots and ELISA assays and which interferes with Cpa binding to
collagen. This antiserum can thus be used for specific agglutination
assays to detect bacteria which express Cpa on their surface. The
antiserum apparently does not cross-react with bacteria which express the
fibronectin-binding protein F1 on their surface despite the fact that a
portion of protein F1 exhibits sequence homologies to Cpa1 and Cpa49.
Accordingly, in accordance with the invention, antisera and antibodies
raised against the Cpa1 and Cpa49 proteins, or portions thereof, may be
employed in vaccines, and other pharmaceutical compositions containing the
proteins for therapeutic purposes are also provided herein. In addition,
diagnostic kits containing the appropriate nucleic acid molecules, the
Cpa1 or Cpa49 proteins, or antibodies or antisera raised against them are
also provided so as to detect bacteria expressing these proteins.
DETAILED DESCRIPTION
OF THE PREFERRED EMBODIMENTS
In accordance with the present invention,
there is provided isolated collagen binding proteins from group A
streptococcal bacteria, and their corresponding amino acid and nucleic
acid sequences are described herein. Two specific proteins isolated in
accordance with the present invention are designated Cpa1, having the
nucleic acid sequence as shown in SEQ ID NO. 1 and the amino acid sequence
of SEQ ID NO. 2, and Cpa49, which has the nucleic acid sequence as shown
in SEQ ID NO. 3 and the amino acid sequence observed in SEQ ID No. 4.
Using different experimental approaches, it has now been shown that Cpa1
and Cpa49 both bind to collagen, e.g., via binding of soluble 125-iodine
labeled collagen, inhibition of binding to immobilized collagen by
recombinant purified Cpa1 protein and by specific antisera directed to
Cpa49/Cpa1, and thus these proteins or their antibodies can thus be useful
in the treatment and prevention of group A streptococcal disease, or in
techniques to identify such proteins, as described further below. It has
also been determined via collagen binding experiments with recombinant
purified Cpa-fragments, that the collagen binding domain can be deduced to
reside in the third (C-terminal) quarter of the protein.
In addition to the structures of Cpa1 and Cpa49 as shown in the amino acid
sequences of SEQ ID NOS. 2 and 4, respectively, as would be recognized by
one of ordinary skill in this art, modification and changes may be made in
the structure of the peptides of the present invention and DNA segments
which encode them and still obtain a functional molecule that encodes a
protein or peptide with desirable characteristics. The amino acid changes
may be achieved by changing the codons of the DNA sequence. For example,
certain amino acids may be substituted for other amino acids in a protein
structure without appreciable loss of interactive binding capacity with
structures such as, for example, antigen-binding regions of antibodies or
binding sites on substrate molecules. Since it is the interactive capacity
and nature of a protein that defines that protein's biological functional
activity, certain amino acid sequence substitutions can be made in a
protein sequence, and, of course, its underlying DNA coding sequence, and
nevertheless obtain a protein with like properties. It is thus
contemplated by the inventors that various changes may be made in the
peptide sequences of the disclosed compositions, or corresponding DNA
sequences which encode said peptides without appreciable loss of their
biological utility or activity.
In addition, amino acid substitutions are also possible without affecting
the collagen binding ability of the isolated proteins of the invention,
provided that the substitutions provide amino acids having sufficiently
similar properties to the ones in the original sequences.
Accordingly, acceptable amino acid substitutions are generally therefore
based on the relative similarity of the amino acid side in substituents,
for example, their hydrophobicity, hydrophilicity, charge, size, and the
like. Exemplary substitutions which take various of the foregoing
characteristics into consideration are well known to those of skill in the
art and include: arginine and lysine; glutamate and aspartate; serine and
threonine; glutamine and asparagine; and valine, leucine and isoleucine.
The isolated proteins of the present invention can be prepared in a number
of suitable ways known in the art including typical chemical synthesis
processes to prepare a sequence of polypeptides.
The synthetic polypeptides of be invention can thus be prepared using the
well known techniques of solid phase, liquid phase, or peptide
condensation techniques, or any combination thereof, can include natural
and unnatural amino acids. Amino acids used for peptide synthesis may be
standard Boc (N.sup.a-amino protected N.sup.a-t-butyloxycarbonyl) amino
acid resin with the standard deprotecting, neutralization, coupling and
wash protocols of the original solid phase procedure of Merrifield (J. Am.
Chem. Soc., 85:2149 2154, 1963), or the base-labile N.sup.a-amino
protected 9-fluorenylmethoxycarbonyl (Fmoc) amino acids first described by
Carpino and Han (J. Org. Chem., 37:3403 3409, 1972). Both Fmoc and Boc
N.sup.a-amino protected amino acids can be obtained from Fluka, Bachem,
Advanced Chemtech, Sigma, Cambridge Research Biochemical, Bachem, or
Peninsula Labs or other chemical companies familiar to those who practice
this art. In addition, the method of the invention can be used with other
N.sup.a-protecting groups that are familiar to those skilled in this art.
Solid phase peptide synthesis may be accomplished by techniques familiar
to those in the art and provided, for example, in Stewart and Young, 1984,
Solid Phase Synthesis, Second Edition, Pierce Chemical Co., Rockford,
Ill.; Fields and Noble, 1990, Int. J. Pept Protein Res. 35:161 214, or
using automated synthesizers, such as sold by ABS. Thus, polypeptides of
the invention may comprise D-amino acids, a combination of D- and L-amino
acids, and various "designer" amino acids (e.g., .beta.-methyl amino
acids, C.alpha.-methyl amino acids, and N.alpha.-methyl amino acids, etc.)
to convey special properties. Synthetic amino acids include ornithine for
lysine, fluorophenylalanine for phenylalanine, and norleucine for leucine
or isoleucine. Additionally, by assigning specific amino acids at specific
coupling steps, .alpha.-helices, .beta. turns, .beta. sheets,
.gamma.-turns, and cyclic peptides can be generated.
In a further embodiment, subunits of peptides that confer useful chemical
and structural properties will be chosen. For example, peptides comprising
D-amino acids will be resistant to L-amino acid-specific proteases in
vivo. In addition, the present invention envisions preparing peptides that
have more well defined structural properties, and the use of
peptidomimetics and peptidomimetic bonds, such as ester bonds, to prepare
peptides with novel properties. In another embodiment, a peptide may be
generated that incorporates a reduced peptide bond, i.e.,
R.sub.1--CH.sub.2--NH--R.sub.2, where R.sub.1 and R.sub.2 are amino acid
residues or sequences. A reduced peptide bond may be introduced as a
dipeptide subunit. Such a molecule would be resistant to peptide bond
hydrolysis, e.g., protease activity. Such peptides would provide ligands
with unique function and activity, such as extended half-lives in vivo due
to resistance to metabolic breakdown or protease activity. It is also well
known that in certain systems, constrained peptides show enhanced
functional activity (Hruby, Life Sciences, 31:189 199, 1982); (Hruby et
al., Biochem J., 268:249 262, 1990).
Also provided herein are sequences of nucleic acid molecules that
selectively hybridize with nucleic acid molecules encoding the
collagen-binding proteins of the invention, or portions thereof, such as
consensus or variable sequence amino acid motifs, from Streptococcus
pyogenes described herein or complementary sequences thereof. By
"selective" or "selectively" is meant a sequence which does not hybridize
with other nucleic acids. This is to promote specific detection of Cpa1 or
Cpa49. Therefore, in the design of hybridizing nucleic acids, selectivity
will depend upon the other components present in a sample. The hybridizing
nucleic acid should have at least 70% complementarity with the segment of
the nucleic acid to which it hybridizes. As used herein to describe
nucleic acids, the term "selectively hybridizes" excludes the occasional
randomly hybridizing nucleic acids, and thus, has the same meaning as
"specifically hybridizing". The selectively hybridizing nucleic acids of
the invention can have at least 70%, 80%, 85%, 90%, 95%, 97%, 98%, and 99%
complementarity with the segment of the sequence to which they hybridize.
The invention contemplates sequences, probes and primers which selectively
hybridize to the encoding DNA or the complementary, or opposite, strand of
DNA as those specifically provided herein. Specific hybridization with
nucleic acid can occur with minor modifications or substitutions in the
nucleic acid, so long as functional species-specific hybridization
capability is maintained. By "probe" is meant nucleic acid sequences that
can be used as probes or primers for selective hybridization with
complementary nucleic acid sequences for their detection or amplification,
which probes can vary in length from about 5 to 100 nucleotides, or
preferably from about 10 to 50 nucleotides, or most preferably about 18 24
nucleotides. Therefore, the terms "probe" or "probes" as used herein are
defined to include "primers". Isolated nucleic acids are provided herein
that selectively hybridize with the species-specific nucleic acids under
stringent conditions and should have at least 5 nucleotides complementary
to the sequence of interest as described by Sambrook et al., 1989.
MOLECULAR CLONING: A LABORATORY MANUAL, 2nd ed. Cold Spring Harbor
Laboratory, Cold Spring Harbor, N.Y.
If used as primers, the composition preferably includes at least two
nucleic acid molecules which hybridize to different regions of the target
molecule so as to amplify a desired region. Depending on the length of the
probe or primer, the target region can range between 70% complementary
bases and full complementarity and still hybridize under stringent
conditions. For example, for the purpose of diagnosing the presence of the
S. pyogenes, the degree of complementarity between the hybridizing nucleic
acid (probe or primer) and the sequence to which it hybridizes (e.g.,
group A streptococcal DNA from a sample) is at least enough to distinguish
hybridization with a nucleic acid from other bacteria.
The nucleic acid sequences encoding Cpa1 or Cpa49 proteins or portions
thereof, such as consensus or variable sequence amino acid motifs, can be
inserted into a vector, such as a plasmid, and recombinantly expressed in
a living organism to produce recombinant Cpa1 or Cpa49 proteins or active
fragments thereof.
Recombinant proteins are produced by methods well known to those skilled
in the art. A cloning vector, such as a plasmid or phage DNA is cleaved
with a restriction enzyme, and the DNA sequence encoding the Cpa1 or Cpa49
protein or active fragments thereof, such as consensus or variable
sequence amino acid motifs, is inserted into the cleavage site and ligated.
The cloning vector is then inserted into a host to produce the protein or
fragment encoded by the Cpa1 or Cpa49 encoding DNA. Suitable hosts include
bacterial hosts such as Escherichia coli, Bacillus subtilis, yeasts and
other cell cultures. Production and purification of the gene product may
be achieved and enhanced using known molecular biology techniques.
In accordance with the present invention, we have sequenced an 11.5 kb
genomic fragment of serotype M49 GAS strain CS101 harboring the nra gene
that is 63% homologous to the rofA positive regulatory gene. In contrast
to the apparent function of rofA, nra was found to encode a negative
regulator affecting its own expression, the expression of two adjacent
operons and several other genes. Some of these genes encode potentional
intracellular proteins, whereas others encode surface proteins such as the
collagen-binding CPA (this study) and the fibronectin-binding PrtF2 (Jaffe
et al., 1996), which may be involved in virulence In addition, nra
influences the expression of the mga regulatory gene and, thereby, the
factors contained in the mga region. Expression of nra was found to be
maximal in early stationary phase and was not significantly influenced by
atmospheric conditions. Overall, the present invention includes the
identification of a unique GAS negative regulator and implicates its
function in a regulatory network affecting virulence factor expression in
GAS, as set forth in detail in Podbielski et al., Molecular Microbiol.
31(4):1051 1064 (1999), incorporated herein by reference.
In accordance with the present invention, an analysis was undertaken of
the genomic region containing the nra gene. In this analysis, an 11 489 bp
portion of the GAS chromosome was sequenced from a Lambda library of the
serotype M49 GAS genome (GenBank accession no. U 49397). Computer analysis
of this sequence revealed the present of nine complete and two partial
predicted open reading frames (ORFs). Homology comparisons with GenBank
entries demonstrated the similarity of 10 of the ORFs to known bacterial
protein sequences (Table 1 (see Original Patent)). Detailed analysis of
the gene products encoded in this region (see the following sections)
revealed the presence of a negative regulatory gene, nra, and immediately
upstream in the opposite orientation, a collagen-binding protein, cpa. The
genomes of GAS serotypes in GenBank and the available streptococcal
serotype M1 genomic sequences (Roe et al., 1997) were searched for
homologues to nra and cpa. The gene sharing the highest degree of homology
with nra was the positive regulatory factor, rofA, while cpa showed the
highest homology to a gene for a fibronectin-binding protein, prtF.
A more detailed computer analysis of the similarity between the negative
regulator nra and the positive regulator rofA showed that both contain
similar N-terminal double helix-turn-helix motifs whose intramolecular
localization would be consistent with a negative or dual regulatory
function of the proteins (Prag et al., 1997). Homology between the
collagen-binding cpa genes and the fibronectin-binding prtF genes was
confined to the N-terminal sections and did not include the portions of
prtF encoding its two fibronectin binding domains (Taley et al., 1994;
Ozeri et al., 1996; Sela et al., 1993). The genes of fibronectin-binding
proteins F have at least two isotypes, prtF (Hanski and Caparon, 1992) and
sfb (Talay et al., 1992), which exhibit 52% sequence homology. Similarly
the genes of collagen-binding proteins, cpa, also appeared to have
multiple forms such as cps in M49 and cpa.1 in M1, which shared
approximately 53% homology to each other and 23% homology to the prtF
family of proteins.
In order to confirm and extend the results of the sequence comparisons,
oligonucleotides specific for prtF (Natanson et al., 1995), prtF2, cpa
(M49/M1), nra and rofA genes were synthesized. These oligonucleotides were
used as polymerase chain reaction (PCR) primers on genomic DNA from
serotypes M1, M2, M3, M4, M5, M6, M12, M18, M24 and eight independent M49
strains. In addition, the primers were used to generate probes for
Southern blot hybridizations that were performed with EcoRI- and HindiII-digested
genomic DNA of the 10 serotype strains. Based on the results from both
analyses, no variation was found within the M49 serotype. However,
different M protein serotype strains harbored either rofA, nra or both
genes. Any combination of regulator and binding protein (cpa, prtF, prtF2)
could also be found. Therefore, the nra/cpa and rofA/prtF pairs are not
mutually exclusive, and single strains can also contain any combination of
regulators and binding proteins. What was particularly striking was that,
although M49- and M1-contained gene pairs had different regulatory
proteins (cpa/nra and cpa.1/rofA.1 respectively), the binding and
regulatory genes were flanked by five genes sharing >98% homology and
three genes with <50% homology that indicated that cpa and nra could be
part of a pathogenicity island. In the serotype M49 strain used for
further study, in addition to the cpa/nra gene pair, a prtF2 gene was
contained in a separate location on the GAS chromosome. The localization
of other regulator/binding protein pairs, especially in strains containing
multiple regulators or binding proteins, awaits further analysis.
The transcriptional organization of nra, cpa and flanking genes was
determined by Northern blotting using PCR-generated specific probes (see
Table 4 (see Original Patent) for primer sequences). Each Northern blot
was repeated three or four times, and the results are given in FIG. 2 (see Original Patent).
To determine the effect of nra on the transcription of itself and
neighboring genes, an nra mutant was constructed by genomic insertion of
the plasmid pFW11. The construct was confirmed by Southern blot
hybridization and specific PCRs using nra mutant genomic DNA (data not
shown). As transcription of rofA, the gene sharing the greatest homology
to nra, is increased under aerobic conditions, the Northern analyses were
carried out on RNA isolated from cells grown under both aerobic and
anaerobic conditions. It should be noted that nra was transcribed at very
low rates and was barely detectable in 80 .mu.g of total RNA.
The nra region was found to be monocistronically transcribed (.apprxeq.1.8
kb) and upregulated in an nra mutant. Transcription was slightly, although
probably not significantly, induced under aerobic conditions. The three
genes immediately downstream of nra, ORF5-nifR3L-kinL, were transcribed as
an operon whose 2.6 kb transcript, as detected with a nifR3L probe, is
shown in FIG. 2B (see Original Patent). The ORF5-kinL operon was expressed
at higher levels under aerobic conditions and in an nra mutant, suggesting
that this operon falls under the control of nra. The different
transcription rates of nifR3L in wild-type and nra mutant strains were
confirmed by Northern blots performed on serial dilutions of total mRNA.
Reverse transcriptase (RT)-PCR carried out on total mRNA using primers
directed to the 3' end of nra and the 5' end of ORF5 yielded a product
that would be present only if at least some transcriptional readthrough
occurs between nra and ORF5 (data not shown). Thus, inverted repeats
present in the non-coding section between nra and ORF5 serve only as a
weak transcriptional terminator, allowing a small amount of readthrough
between nra and ORF5. However, the majority of the nifR3L transcript
originates from a second promoter upstream of ORF5, as only the ORF5-kinL
transcript could be visualized on the Northern blots. Because insertion of
pFW11 in nra disrupted readthrough between nra and ORF5, the only promoter
still present in the nra mutants was the promoter ahead of ORF5. As the
ORF5-kinL product was still increased in the nra mutants, it indicates
that nra also has a negative regulatory effect at the promoter immediately
upstream of ORF5.
Northern analyses using a cpa probe detected a 5.2 kb transcript composed
of the four (cpa-ORF2) located immediately upstream of and in the opposite
orientation to nra. Transcription of the cpa operon was also increased in
an nra mutant, suggesting its regulation by nra. However, unlike the nra
and ORF5-kinL transcripts, the cpa-ORF2 transcript was more abundant under
anaerobic conditions, subsiding a possible superimposed second regulatory
mechanism for this operon.
Northern blots using a prtF2 probe detected an mRNA consistent in size
with a monocistronic transcription of prtF2. Although the gene is located
at a distant site in the chromosome, increased transcription of an nra
mutant was detected, and its expression is increased under aerobic
conditions. However, the effects of nra mutation did not generally
influence mRNA transcription rate or stability, as the recA transcript was
not affected in the nra mutant (data not shown).
As nra appeared to be a global negative regulator of virulence factors.
Northern blots were used to determine whether nra and the global positive
virulence factor regulator mga affected each other. Levels of mga mRNA
were increased in the nra mutant (Podbielski et al., 1995) for Northern
blot analysis, the nra message was found to be decreased in the mga
mutant, which led to a corresponding increase in the nifR3L and cpa
transcripts that are negatively regulated by nra.
Taken together, the data from the different transcript analyses indicate
that the nra gene product is a negative regulator of its own expression
and the two adjacent operons as well as of prtF2 and mga. The mga
regulator, in turn, was suggested to be a positive regulator of nra
expression and, thus, an indirect suppressor of nra-dependent genes.
With regard to the gene coding for the collagen-binding region of the
group A streptococci, the cpa gene was demonstrated to be negatively
regulated by the nra gene product. To determine whether CPA was involved
in matrix molecule interactions, a recombinant CPA-maltose binding protein
fusion was expressed in Escherichia Coli. After purification and labeling,
it was subjected to an enzyme-linked binding assay with the Immobilized
human matrix proteins, collagen type 1, fibronectin and laminin. Using the
purified maltose-binding protein as a negative control, the Cpa-fusion
protein bound significantly to collagen and, to a lesser extent, to
laminin (P<0.05 as determined by the Wilcoxon range test). Binding of Cpa
to fibronectin and BSA remained at the level of the maltose-binding
protein alone. Thus, like protein F2, Cpa is a second nra-controlled,
potential GAS surface protein, exhibiting human matrix protein-binding
properties.
The regulation of these binding proteins by nra would predict that
stationary phase M49 nra mutants may still contain Cpa and protein F2, as
they continue to transcribe cpa and prtF2 upon entry into stationary
phase. This could result in better fibronectin and collagen binding by
stationary phase nra mutants. To test this prediction, M49 wild type and
nra mutant strains were cultured on plates under anaerobic conditions
until stationary phase was reached. The cells were harvested, fluorescein
isothiocyanate (FITC) labeled and the binding of the two strains to
immobilized collagen and fibronectin was measured. The nra mutant exhibits
significantly increased binding to both matrix proteins compared with the
wild type. Collagen-binding assays conducted with unmarked cells that were
detected with labeled polyclonal serum yielded similar results (data not
shown), suggesting that the FITC-labeling protocol did not damage the
cells or alter binding significantly. As recombinant Cpa was found to
block the binding of FITC-labeled GAS to immobilized collagen (data not
shown), the binding of cells to collagen is probably mediated through the
interaction of Cpa and collagen. Overall, these data indicate that, while
wild-type bacteria could decrease their affinity to matrix proteins when
entering stationary growth phase, the nra mutants no longer had this
ability.
The organization of the genomic regions controlled by nra were remarkably
similar to those flanking rofA. The five downstream genes were more than
98% homologous. The upstream four-gene operon structure was conserved for
both regulators. However, the homology of these genes was only 43 52%
across serotypes. In rofA-containing M6, the first gene upstream was the
fibronectin-binding protein gene, prtF. In the rofA-containing serotype M1
and the nra-containing serotype M49, the first gene of the upstream operon
consisted of a novel gene, cpa. Protein purification and binding studies
showed that cpa encoded a collagen-binding protein that was unable to bind
fibronectin. Further PCR and Southern hybridization analysis of other GAS
M serotypes confirmed that there was no correlation between the regulator
(nra/rofA) and the binding protein contained in the upstream operon (prtF/cpa).
In addition, strains were found that contained both regulators and/or
multiple binding proteins. For example, serotype M49 contained an nra/cpa
pair. However, a prtF2 gene located elsewhere in the chromosome was
monocistronically transcribed and still negatively regulated by nra. The
presence of both the positive rofA regulator and the negative nra
regulator in the serotype M5 and the presence of only rofA in serotype M6
may explain the Influences of genomic background noted during studies of
RofA regulation in these serotypes (Van Heyningen et al., 1993; Fogg and
Caparon, 1997).
The expression of nra during growth was followed using a luciferase
reporter gene fused to the 3' end of nra. The high-sensitivity detection
of luciferase activity by a luminometer coupled with the 10 min half-life
of luciferase in GAS (unpublished results) allowed the analysis of luc-fusion
activity even at low cell densities nra was transcribed at the highest
rate during early stationary phase and was not significantly influenced by
atmospheric conditions. This was in contrast to rofA, which has been
described as being maximally active under aerobic conditions (Fogg and
Caparon, 1997). The differences in these results could reflect either
differences in sensor capacity between rofA and nra or a methodological
difference in the assay methods used. The rofA measurements were done by
determining the level of an accumulated stable .beta.-galactosidase
reporter from a multicopy plasmid obtained using the experimental
procedures described in the examples below.
In addition to the Cpa proteins above in various procedures, including the
detection of the presence of Cpa1 or Cpa49 or their antibodies, the
present invention also contemplates the use of the nucleic acids described
herein to detect and identify the presence of collagen-binding GAS as
well. The methods are useful for diagnosing group A streptococcal
infections and other streptococcal diseases such as may occur in catheter
related infections, biomaterial related infections, respiratory tract
infections, cardiac, gastrointestinal or central nervous system
infections, ocular infections, wound infections, skin infections, and a
myriad of other diseases including conjunctivitis, keratitis, cellulitis,
myositis, septic arthritis, osteomyelitis, bovine mastitis, and canine
pyoderma, all as affected by group A streptococcal bacteria.
In accordance with the invention, a preferred method of detecting the
presence of Cpa1 or Cpa49 proteins involves the steps of obtaining a
sample suspected of containing group A streptococci. The sample may be
taken from an individual, for example, from one's blood, saliva, tissues,
bone, muscle, cartilage, or skin. The cells can then be lysed, and the DNA
extracted, precipitated and amplified. Detection of DNA from group A
streptococci can be achieved by hybridizing the amplified DNA with a probe
for GAS that selectively hybridizes with the DNA as described above.
Detection of hybridization is indicative of the presence of group A
streptococci.
Preferably, detection of nucleic acid (e.g. probes or primers)
hybridization can be facilitated by the use of detectable moieties. For
example, the probes can be labeled with biotin and used in a streptavidin-coated
microtiter plate assay. Other detectable moieties include radioactive
labeling, enzyme labeling, and fluorescent labeling, for example.
DNA may be detected directly or may be amplified enzymatically using
polymerase chain reaction (PCR) or other amplification techniques prior to
analysis. RNA or cDNA can be similarly detected. Increased or decrease
expression of Cpa1 or Cpa49 can be measured using any of the methods well
known in the art for the quantification of nucleic acid molecules, such
as, for example, amplification, PCR, RT-PCR, RNase protection, Northern
blotting, and other hybridization methods.
Diagnostic assays for Cpa1 or Cpa49 proteins or active portions thereof,
such as consensus or variable sequence amino acid motifs, or anti-Cpa1 or
Cpa49 antibodies may also be used to detect the presence of a
streptococcal bacterium such as Streptococcus pyogenes. Assay techniques
for determining protein or antibody levels in a sample are well known to
those skilled in the art and include methods such as radioimmunoasssay,
Western blot analysis and ELISA assays.
The isolated, recombinant or synthetic proteins of the present invention,
or antigenic portions thereof (including epitope-bearing fragments), or
fusion proteins including the Cpa1 or Cpa49 proteins as described above,
can be administered to animals as immunogens or antigens, alone or in
combination with an adjuvant, for the production of antibodies reactive
with Cpa1 or Cpa49 proteins or portions thereof. In addition, the proteins
can be used to screen antibodies or antisera for hyperimmune patients from
whom can be derived specific antibodies having a very high affinity for
the proteins.
Antibodies to Cpa1 or Cpa49, or to fragments t can also be used in
accordance with the invention for the specific detection of
collagen-binding streptococcal proteins, for the prevention of infection
from group A streptococci, for the treatment of an ongoing infection, or
for use as research tools. The term "antibodies" as used herein includes
monoclonal, polygonal, chimeric, single chain, bispecific, simianized, and
humanized or primatized antibodies as well as Fab fragments, including the
products of an Fab immunoglobulin expression library. Generation of any of
these types of antibodies or antibody fragments is well known to those
skilled in the art. In the present case, specific polyclonal antiserum
against Cpa has been generated which reacts with Cpa in Western
immunoblots and ELISA assays and interferes with Cpa binding to collagen.
The antiserum can be used for specific agglutination assays to detect
bacteria which express Cpa on their surface. The antiserum does not
cross-react with bacteria which express the fibronectin-binding protein F1
on their surface, although a portion of protein F1 exhibits sequence
homologies to Cpa1 and Cpa49.
Any of the above described antibodies may be labeled directly with a
detectable label for identification and quantification of group A
streptococci. Labels for use in immunoassays are generally known to those
skilled in the art and include enzymes, radioisotopes, and fluorescent,
luminescent and chromogenic substances, including colored particles such
as colloidal gold or latex beads. Suitable immunoassays include
enzyme-linked immunosorbent assays (ELISA).
Alternatively, the antibody may be labeled indirectly by reaction with
labeled substances that have an affinity for immunoglobulin. The antibody
may be conjugated with a second substance and detected with a labeled
third substance having an affinity for the second substance conjugated to
the antibody. For example, the antibody may be conjugated to biotin and
the antibody-biotin conjugate detected using labeled avidin or
streptavidin. Similarly, the antibody may be conjugated to a hapten and
the antibody-hapten conjugate detected using labeled anti-hapten antibody.
These and other methods of labeling antibodies and assay conjugates are
well known to those skilled in the art.
Antibodies to the collagen-binding proteins Cpa1 or Cpa49, or portions
thereof, may also be used in production facilities or laboratories to
isolate additional quantities of the proteins, such as by affinity
chromatography. For example, antibodies to the collagen-binding protein
Cpa1 or Cpa49 may also be used to isolate additional amounts of collagen.
The isolated proteins of the present invention, or active fragments
thereof, and antibodies to the proteins may be useful for the treatment
and diagnosis of group A streptococcal bacterial infections as described
above, or for the development of anti-group A streptococcal vaccines for
active or passive immunization. Further, when administered as
pharmaceutical composition to a wound or used to coat medical devices or
polymeric biomaterials in vitro and in vivo, both the proteins and the
antibodies are useful as blocking agents to prevent or inhibit the binding
of group A streptococci to the wound site or the biomaterials themselves.
Preferably, the antibody is modified so that it is less immunogenic in the
patient to whom it is administered. For example, if the patient is a
human, the antibody may be "humanized" by transplanting the
complimentarity determining regions of the hybridoma-derived antibody into
a human monoclonal antibody as described, e.g., by Jones et al, Nature
321:522 525 (1986) or Tempest et al., Biotechnology 9:266 273 (1991).
Medical devices or polymeric biomaterials to be coated with the
antibodies, proteins and active fragments described herein include, but
are not limited to, staples, sutures, replacement heart valves, cardiac
assist devices, hard and soft contact lenses, intraocular lens implants
(anterior chamber or posterior chamber), other implants such as corneal
inlays, kerato-prostheses, vascular stents, epikeratophalia devices,
glaucoma shunts, retinal staples, scleral buckles, dental prostheses,
thyroplastic devices, laryngoplastic devices, vascular grafts, soft and
hard tissue prostheses including, but not limited to, pumps, electrical
devices including stimulators and recorders, auditory prostheses,
pacemakers, artificial larynx, dental implants, mammary implants, penile
implants, cranio/facial tendons, artificial joints, tendons, ligaments,
menisci, and disks, artificial bones, artificial organs including
artificial pancreas, artificial hearts, artificial limbs, and heart
valves; stents, wires, guide wires, intravenous and central venous
catheters, laser and balloon angioplasty devices, vascular and heart
devices (tubes, catheters, balloons), ventricular assists, blood dialysis
components, blood oxygenators, urethra/ureteral/urinary devices (Foley
catheters, stents, tubes and balloons), airway catheters (endotracheal and
tracheostomy tubes and cuffs), enteral feeding tubes (including
nasogastric, intragastric and jejunal tubes), wound drainage tubes, tubes
used to drain the body cavities such as the pleural, peritoneal, cranial,
and pericardial cavities, blood bags, test tubes, blood collection tubes,
vacutainers, syringes, needles, pipettes, pipette tips, and blood tubing.
It will be understood by those skilled in the art that the term "coated"
or "coating", as used herein, means to apply the protein, antibody, or
active fragment to a surface of the device, preferably an outer surface
that would be exposed to streptococcal bacterial infection. The surface of
the device need not be entirely covered by the protein, antibody or active
fragment.
In addition, the present invention may be utilized as immunological
compositions, including vaccines, and other pharmaceutical compositions
containing the Cpa1 or Cpa49 proteins or portions thereof are included
within the scope of the present invention. Either one or both of the Cpa1
or Cpa49 proteins, or active or antigenic fragments thereof, or fusion
proteins thereof, can be formulated and packaged, alone or in combination
with other antigens, using methods and materials known to those skilled in
the art for vaccines. The immunological response may be used
therapeutically or prophylactically and may provide antibody immunity or
cellular immunity, such as that produced by T lymphocytes.
The immunological compositions, such as vaccines, and other pharmaceutical
compositions can be used alone or in combination with other blocking
agents to protect against human and animal infections caused by or
exacerbated by group A streptococci. In particular, the compositions can
be used to protect humans against skin infections such as impetigo and
eczema, as well as mucous membrane infections such as tonsillopharyngitis.
In addition, effective amounts of the compositions of the present
invention may be used to protect against complications caused by localized
infections such as sinusitis, mastoiditis, parapharygeal abscesses,
cellulitis, necrotizing fascitis, myositis, streptococcal toxic shock
syndrome, pneumonitis endocarditis, meningitis, osteomylitis, and many
other sever diseases. Further, the present compositions can be used to
protect against nonsuppurative conditions such as acute rheumatic fever,
acute glomerulonephritis, obsessive/compulsive neurologic disorders and
exacerbations of forms of psoriasis such as psoriasis vulgaris. The
compositions may also be useful as appropriate in protecting both humans
and other species of animals where needed to combat similar group A
streptococcal infections.
To enhance immunogenicity, the proteins may be conjugated to a carrier
molecule. Suitable immunogenic carriers include proteins, polypeptides or
peptides such as albumin, hemocyanin, thyroglobulin and derivatives
thereof, particularly bovine serum albumin (BSA) and keyhole limpet
hemocyanin (KLH), polysaccharides, carbohydrates, polymers, and solid
phases. Other protein derived or non-protein derived substances are known
to those skilled in the art. An immunogenic carrier typically has a
molecular weight of at least 1,000 Daltons, preferably greater than 10,000
Daltons. Carrier molecules often contain a reactive group to facilitate
covalent conjugation to the hapten. The carboxylic acid group or amine
group of amino acids or the sugar groups of glycoproteins are often used
in this manner. Carriers lacking such groups can often be reacted with an
appropriate chemical to produce them. Preferably, an immune response is
produced when the immunogen is injected into animals such as mice,
rabbits, rats, goats, sheep, guinea pigs, chickens, and other animals,
most preferably mice and rabbits. Alternatively, a multiple antigenic
peptide comprising multiple copies of the protein or polypeptide, or an
antigenically or immunologically equivalent polypeptide may be
sufficiently antigenic to improve immunogenicity without the use of a
carrier.
The Cpa1 or Cpa49 proteins or portions thereof, or combination of
proteins, may be administered with an adjuvant in an amount effective to
enhance the immunogenic response against the conjugate. At this time, the
only adjuvant widely used in humans has been alum (aluminium phosphate or
aluminum hydroxide). Saponin and its purified component Quil A, Freund's
complete adjuvant and other adjuvants used in research and veterinary
applications have toxicities which limit their potential use in human
vaccines. However, chemically defined preparations such as muramyl
dipeptide, monophosphoryl lipid A, phospholipid conjugates such as those
described by Goodman-Snitkoff et al. J. Immunol. 147:410 415 (1991) and
Incorporated by reference herein, encapsulation of the conjugate within a
proteoliposome as described by Miller et al., J. Exp. Mod. 176:1739 1744
(1992) and incorporated by reference herein, and encapsulation of the
protein in lipid vesicles such as Novasome.TM. lipid vesicles (Micro
Vescular Systems, Inc., Nashua, N.H.) may also be useful.
The term "vaccine" as used herein includes DNA vaccines in which the
nucleic acid molecule encoding for a collagen-binding Gas protein, such as
the nucleic acid sequences disclosed herein as SEQ ID NOS. 1 or 3, as used
in a pharmaceutical composition is administered to a patient. For genetic
immunization, suitable delivery methods known to those skilled in the art
include direct injection of plasmid DNA into muscles (Wolff et al., Hum.
M. Genet. 1:363, 1992), delivery of DNA completed with specific protein
carriers (Wu et al., J. Biol. Chem. 264:16985, 1989), coprecipitation of
DNA with calcium phosphate (Benvenisty and Reshef, Proc. Natl. Acad. Sci.
83:9551, 1986), encapsulation of DNA in liposomes (Kaneda et al., Science
243:375, 1989), particle bombardment (Tang et al., Nature 356:152, 1992
and Eisenbraun et al., DNA Cell Biol. 12:791, 1993), and in vivo infection
using cloned retroviral vectors (Seeger et al., Proc. Natl. Acad. Sci.
81:5849, 1984).
In another embodiment, the invention is a polynucleotide which comprises
contiguous nucleic acid sequences capable of being expressed to produce a
gene product upon introduction of said polynucleotide into eukaryotic
tissues in vivo. The encoded gene product preferably either acts as an
immunostimulant or as an antigen capable of generating an immune response.
Thus, the nucleic acid sequences in this embodiment encode an immunogenic
epitope, and optionally a cytokine or a T-cell costimulatory element, such
as a member of the B7 family of proteins.
There are several advantages of immunization with a gene rather than its
gene product. The first is the relative simplicity with which native or
nearly native antigen can be presented to the immune system. Mammalian
proteins expressed recombinantly in bacteria, yeast, or even mammalian
cells often require extensive treatment to ensure appropriate antigenicity.
A second advantage of DNA immunization is the potential for the immunogen
to enter the MHC class I pathway and evoke a cytotoxic T cell response.
Immunization of mice with DNA encoding the influenza A nucleoprotein (NP)
elicited a CD8.sup.+ response to NP that protected mice against challenge
with heterologous strains of flu. (See Montgomery, D. L. et al., Cell Mol
Biol, 43(3):285 92, 1997 and Ulmer, J. et al., Vaccine, 15(8):792 794,
1997.)
Cell mediated immunity is important in controlling infection. Since DNA
immunization can evoke both humoral and cell-mediated immune responses,
its greatest advantage may be that it provides a relatively simple method
to survey a large number of S. pyogenes genes for their vaccine potential.
Pharmaceutical compositions containing the Cpa1 or Cpa49 proteins or
portions thereof, nucleic acid molecules, antibodies, or fragments
thereof, may be formulated in combination with a pharmaceutical excipient
or carrier such as saline, dextrose, water, glycerol, ethanol, other
therapeutic compounds, and combinations thereof. The formulation should be
appropriate for the mode of administration. The compositions are useful
for interfering with, modulating, or inhibiting binding interactions
between streptococcal bacteria and collagen on host cells.
The amount of expressible DNA or transcribed RNA to be introduced into a
vaccine recipient will have a very broad dosage range and may depend on
the strength of the transcriptional and translational promoters used. In
addition, the magnitude of the immune response may depend on the level of
protein expression and on the immunogenicity of the expressed gene
product. In general, effective dose ranges of about 1 ng to 5 mg, 100 ng
to 2.5 mg, 1 .mu.g to 750 .mu.g, and preferably about 10 .mu.g to 300 .mu.g
of DNA is administered directly into muscle tissue. Subcutaneous
injection, intradermal introduction, impression through the skin, and
other modes of administration such as intraperitoneal, intravenous, or
inhalation delivery are also suitable. It is also contemplated that
booster vaccinations may be provided. Following vaccination with a
polynucleotide immunogen, boosting with protein immunogens such as the
Cpa1 or Cpa49 gene product is also contemplated.
The polynucleotide may be "naked", that is, unassociated with any
proteins, adjuvants or other agents which affect the recipient's immune
system. In this case, it is desirable for the polynucleotide to be in a
physiologically acceptable solution, such as, but not limited to, sterile
saline or sterile buffered saline. Alternatively, the DNA may be
associated with liposomes, such as lecithin liposomes or other liposomes
known in the art, as a DNA-liposome mixture, or the DNA may be associated
with an adjuvant known in the art to boost immune responses, such as a
protein or other carrier. Agents which assist in the cellular uptake of
DNA, such as, but not limited to, calcium ions, may also be used. These
agents are generally referred to herein as transfection facilitating
reagents and pharmaceutically acceptable carriers. Techniques for coating
microprojectiles coated with polynucleotide are known in the art and are
also useful in connection with this invention. For DNA intended for human
use it may be useful to have the final DNA product in a pharmaceutically
acceptable carrier or buffer solution. Pharmaceutically acceptable
carriers or buffer solutions are known in the art and include those
described in a variety of texts such as Remington's Pharmaceutical
Sciences.
It is recognized by those skilled in the art that an optimal dosing
schedule for a DNA vaccination regimen may include as many as five to six,
but preferably three to five, or even more preferably one to three
administrations of the immunizing entity given at intervals of as few as
two to four weeks, to as long as five to ten years, or occasionally at
even longer intervals.
Suitable methods of administration of any pharmaceutical composition
disclosed in this application include, but are not limited to, topical,
oral, anal, vaginal, intravenous, intraperitoneal, intramuscular,
subcutaneous, intranasal and intradermal administration.
For topical administration, the composition is formulated in the form of
an ointment, cream, gel, lotion, drops (such as eye drops and ear drops),
or solution (such as mouthwash). Wound or surgical dressings, sutures and
aerosols may be impregnated with the composition. The composition may
contain conventional additives, such as preservatives, solvents to promote
penetration, and emollients. Topical formulations may also contain
conventional carriers such as cream or ointment bases, ethanol, or oleyl
alcohol.
In a preferred embodiment, a vaccine is packaged in a single dosage for
immunization by parenteral (i.e., intramuscular, intradermal or
subcutaneous) administration or nasopharyngeal (i.e., intranasal)
administration. The vaccine is most preferably injected intramuscularly
into the deltoid muscle. The vaccine is preferably combined with a
pharmaceutically acceptable carrier to facilitate administration. The
carrier is usually water or a buffered saline, with or without a
preservative. The vaccine may be lyophilized for resuspension at the time
of administration or in solution.
Microencapsulation of the protein will give a controlled release. A number
of factors contribute to the selection of a particular polymer for
microencapsulation. The reproducibility of polymer synthesis and the
microencapsulation process, the cost of the microencapsulation materials
and process, the toxicological profile, the requirements for variable
release kinetics and the physicochemical compatibility of the polymer and
the antigens are all factors that must be considered. Examples of useful
polymers are polycarbonates, polyesters, polyurethanes, polyorthoesters,
polyamides, poly (D,L-lactide-co-glycolide) (PLGA) and other biodegradable
polymers. The use of PLGA for the controlled release of antigen is
reviewed by Eldridge et al., CURRENT TOPICS IN MICROBIOLOGY AND
IMMUNOLOGY, 146:59 66 (1989).
The preferred dose for human administration is from 0.01 mg/kg to 10
mg/kg, preferably approximately 1 mg/kg. Based on this range, equivalent
dosages for heavier body weights can be determined. The dose should be
adjusted to suit the individual to whom the composition is administered
and will vary with age, weight and metabolism of the individual. The
vaccine may additionally contain stabilizers or pharmaceutically
acceptable preservatives, such as thimerosal
(ethyl(2-mercaptobenzoate-S)mercury sodium salt) (Sigma Chemical Company,
St. Louis, Mo.).
When labeled with a detectable biomolecule or chemical, the
collagen-binding proteins described herein are useful for purposes such as
in vivo and in vitro diagnosis of streptococcal infections or detection of
group A streptococcal bacteria. Laboratory research may also be
facilitated through use of such protein-label conjugates. Various types of
labels and methods of conjugating the labels to the proteins are well
known to those skilled in the art. Several specific labels are set forth
below. The labels are particularly useful when conjugated to a protein
such as an antibody or receptor. For example, the protein can be
conjugated to a radiolabel such as, but not restricted to, .sup.32P,
.sup.3H, .sup.14C, .sup.35S, .sup.125I, or .sup.131I. Detection of a label
can be by methods such as scintillation counting, gamma ray spectrometry
or autoradiography.
Bioluminescent labels, such as derivatives of firefly luciferin, are also
useful. The bioluminescent substance is covalently bound to the protein by
conventional methods, and the labeled protein is detected when an enzyme,
such as luciferase, catalyzes a reaction with ATP causing the
bioluminescent molecule to emit photons of light. Fluorogens may also be
used to label proteins. Examples of fluorogens include fluorescein and
derivatives, phycoerythrin, allo-phycocyanin, phycocyanin, rhodamine, and
Texas Red. The fluorogens are generally detected by a fluorescence
detector.
The protein can alternatively be labeled with a chromogen to provide an
enzyme or affinity label. For example, the protein can be biotinylated so
that it can be utilized in a biotin-avidin reaction, which may also be
coupled to a label such as an enzyme or fluorogen. For example, the
protein can be labeled with peroxidase, alkaline phosphatase or other
enzymes giving a chromogenic or fluorogenic reaction upon addition of
substrate. Additives such as 5-amino-2,3-dihydro-1,4-phthalazinedione
(also known as Luminol.sup.a) (Sigma Chemical Company, St. Louis, Mo.) and
rate enhancers such as p-hydroxybiphenyl (also known as p-phenylphenol)
(Sigma Chemical Company, St. Louis, Mo.) can be used to amplify enzymes
such as horseradish peroxidase through a luminescent reaction; and
luminogeneic or fluorogenic dioxetane derivatives of enzyme substrates can
also be used. Such labels can be detected using enzyme-linked immunoassays
(ELISA) or by detecting a color change with the aid of a
spectrophotometer. In addition, proteins may be labeled with colloidal
gold for use in immunoelectron microscopy in accordance with methods well
known to those skilled in the art.
The location of a ligand in cells can be determined by labeling an
antibody as described above and detecting the label in accordance with
methods well known to those skilled in the art, such as immunofluorescence
microscopy using procedures such as those described by Warren and Nelson
(Mol. Cell. Biol., 7: 1326 1337, 1987).
In addition to the therapeutic compositions and methods described above,
the Cpa1 and Cpa49 proteins or active portions or fragments thereof,
nucleic acid molecules or antibodies are useful for interfering with the
initial physical interaction between a pathogen and mammalian host
responsible for infection, such as the adhesion of bacteria, to mammalian
extracellular matrix proteins such as collagen on in-dwelling devices or
to extracellular matrix proteins in wounds; to block Cpa1 or Cpa49
protein-mediated mammalian cell invasion; to block bacterial adhesion
between collagen and bacterial Cpa1 or Cpa49 proteins or portions thereof
that mediate tissue damage; and, to block the normal progression of
pathogenesis in infections initiated other than by the implantation of
in-dwelling devices or surgical techniques.
The Cpa1 or Cpa49 proteins, or active fragments thereof, are useful in a
method for screening compounds to identify compounds that inhibit collagen
binding of streptococci to host molecules. In accordance with the method,
the compound of interest is combined with one or more of the Cpa1 or Cpa49
proteins or fragments thereof and the degree of binding of the protein to
collagen or other extracellular matrix proteins is measured or observed.
If the presence of the compound results in the inhibition of
protein-collagen binding, for example, then the compound may be useful for
inhibiting group A streptococci in vivo or in vitro. The method could
similarly be used to identify compounds that promote interactions of GAS
with host molecules. The method is particularly useful for identifying
compounds having bacteriostatic or bacteriocidal properties.
For example, to screen for GAS agonists or antagonists, a synthetic
reaction mixture, a cellular compartment (such as a membrane, cell
envelope or cell wall) containing one or more of the Cpa1 or Cpa49
proteins or fragments thereof and a labeled substrate or ligand of the
protein is incubated in the absence or the presence of a compound under
investigation. The ability of the compound to agonize or antagonize the
protein is shown by a decrease in the binding of the labeled ligand or
decreased production of substrate product. Compounds that bind well and
increase the rate of product formation from substrate are agonists.
Detection of the rate or level of production of product from substrate may
be enhanced by use of a reporter system, such as a calorimetric labeled
substrate converted to product, a reporter gene that is responsive to
changes in Cpa1 or Cpa49 nucleic add or protein activity, and binding
assays known to those skilled in the art. Competitive inhibition assays
can also be used.
Potential antagonists include small organic molecules, peptides,
polypeptides and antibodies that bind to Cpa1 or Cpa49 nucleic acid
molecules or proteins or portions thereof and thereby inhibit their
activity or bind to a binding molecule (such as collagen to prevent the
binding of the Cpa1 or Cpa49 nucleic acid molecules or proteins to its
ligand. For example, a compound that inhibits Cpa1 or Cpa49 activity may
be a small molecule that binds to and occupies the binding site of the
Cpa1 or Cpa49 protein, thereby preventing binding to cellular binding
molecules, to prevent normal biological activity. Examples of small
molecules include, but are not limited to, small organic molecule,
peptides or peptide-like molecules. Other potential antagonists include
antisense molecules. Preferred antagonists include compounds related to
and variants or derivatives of the Cpa1 or Cpa49 proteins or portions
thereof. The nucleic acid molecules described herein may also be used to
screen compounds for antibacterial activity.
The invention further contemplates a kit containing one or more Cpa1 or
Cpa49-specific nucleic acid probes, which can be used for the detection of
collagen-binding proteins from group A streptococci in a sample, or for
the diagnosis of GAS bacterial infections. Such a kit can also contain the
appropriate reagents for hybridizing the probe to the sample and detecting
bound probe. In an alternative embodiment, the kit contains antibodies
specific to either or both Cpa1 and Cpa49 proteins or active portions
thereof which can be used for the detection of group A streptococci.
In yet another embodiment, the kit contains either or both the Cpa1 and
Cpa49 proteins, or active fragments thee, which can be used for the
detection of GAS bacteria or for the presence of antibodies to
collagen-binding GAS proteins in a sample. The kits described herein may
additionally contain equipment for safely obtaining the sample, a vessel
for containing the reagents, a timing means, a buffer for diluting the
sample, and a colorimeter, reflectometer, or standard against which a
color change may be measured.
In a preferred embodiment, the reagents, including the protein or
antibody, are lyophilized, most preferably in a single vessel. Addition of
aqueous sample to the vessel results in solubilization of the lyophilized
reagents, causing them to react. Most preferably, the reagents are
sequentially lyophilized in a single container, in accordance with methods
well known to those skilled in the art that minimize reaction by the
reagents prior to addition of the sample.
Claim 1 of 5 Claims
1. An antibody or antiserum
raised against an isolated collagen-binging protein from group A
streptococci selected from the group consisting of Cpa1 and Cpa49.
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