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Title: Methods of eliciting
broadly neutralizing antibodies targeting HIV-1 gp41
United States Patent: 7,311,916
Issued: December 25, 2007
Inventors: Wild; Carl T.
(Gaithersburg, MD), Weiss; Carol D. (Bethesda, MD)
Assignee: The Government of
the United States of America, as represented by the Secretary, Department
of Health and Human Services (Washington, DC), N/A (Gaitherburg, MD),
Panacos Pharmaceuticals, Inc.
Appl. No.:
10/660,206
Filed: September 10, 2003
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Pharm Bus Intell
& Healthcare Studies
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Abstract
The present invention is directed to the
induction and characterization of a humoral immune response targeting
"entry-relevant" gp41 structures. In its broadest aspect, the present
invention is directed to methods of raising a neutralizing antibody
response to a broad spectrum of HIV strains and isolates. The present
invention targets particular molecular conformations or structures that
occur at the cell surface of HIV during viral entry into host cells. Such
a humoral response can be generated in vivo as a prophylactic measure in
individuals to reduce or inhibit the ability of HIV to infect uninfected
cells in the individual's body. Such a response can also be employed to
raise antibodies against "entry relevant" gp41 structures. These
antibodies can be employed for therapeutic uses, and as tools for further
illuminating the mechanism of HIV cell entry.
Description of the
Invention
SUMMARY OF THE INVENTION
An objective of the present invention is the induction and/or
characterization of a humoral immune response targeting "entry-relevant"
gp41 structures. In its broadest aspect, the present invention is directed
to methods of raising a neutralizing antibody response to a broad spectrum
of HIV strains and isolates. The present invention targets particular
molecular conformations or structures that occur, or are exposed,
following interaction of HIV with the cell surface during viral entry.
Such a humoral response can be generated in vivo as a prophylactic or
therapeutic measure in individuals to reduce or inhibit the ability of HIV
to infect uninfected cells in the individual's body. Such a response can
also be employed to raise antibodies against "entry relevant" gp41
structures. These antibodies can be subsequently employed for therapeutic
uses, and as tools for further illuminating the mechanism of HIV cell
entry.
One aspect of the present invention relates to a method of raising a
broadly neutralizing antibody response to HIV by administering to a mammal
a peptide or polypeptide comprising an amino acid sequence that is capable
of forming a stable coiled-coil solution structure corresponding to or
mimicking the heptad repeat region of gp41, (or the N-helical domain of
gp41). Peptides of this aspect of the invention are exemplified by P-15
and P-17 described herein.
A second aspect of the present invention relates to a method of raising a
broadly neutralizing antibody response to HIV by administering to a mammal
a peptide or polypeptide comprising an amino acid sequence that
corresponds to, or mimics, the transmembrane-proximal amphipathic
.alpha.-helical segment of gp41 (at the C-helical domain of gp41), or a
portion thereof. Peptides of this aspect of the invention are exemplified
by P-16 and P-18 described herein.
A third aspect of the present invention relates to a method of raising a
broadly neutralizing antibody response to HIV by administering to a mammal
a composition including one or more peptides or polypeptides which
comprise amino acid sequences that are capable of forming solution stable
structures that correspond to, or mimic, the gp41 core six helix bundle.
This bundle forms in gp41 by the interaction of the distal regions
(N-helical domain and C-helical domain) of the transmembrane protein.
This aspect of the invention is also directed to novel mixtures of
peptides and polypeptides, including multimeric and conjugate structures,
wherein said mixtures and structures form a stable core helix solution
structure. A preferred embodiment of this aspect of the invention involves
raising antibodies to a physical mixture of N-helical domain peptide and
C-helical domain peptide, for example, P-17 and P-18, P-15 and P-16, P-17
and P-16, or P-15 and P-18.
The present invention is also directed to a method of raising a broadly
neutralizing antibody response to HIV by administering to a mammal a
composition including one or more novel peptides and proteins, herein
referred to as conjugates, that mimic fusion-active transmembrane protein
structures. These conjugates are formed from two or more amino acid
sequences that comprise:
(a) one or more amino acid sequences that are capable of forming a stable
coiled-coil solution structure corresponding to or mimicking the heptad
repeat region of gp41 (N-helical domain); and
(b) one or more amino acid sequences that correspond to, or mimic, an
amino acid sequence of the transmembrane-proximal amphipathic
.alpha.-helical segment of gp41 (C-helical domain);
wherein
said one or more sequences (a) and (b) are alternately linked to one
another via a bond, such as a peptide bond (amide linkage) or by an amino
acid linking sequence consisting of about 2 to about 25 amino acids. These
conjugates are preferably recombinantly produced. An example of such a
conjugate is described in Example 5.
In a preferred embodiment of this aspect of the invention, one or more of
these conjugates folds and assembles in solution into a structure
corresponding to, or mimicking, the gp41 core six helix bundle.
The present invention also relates to methods for forming peptides,
multimers and conjugates of the invention.
The present invention also relates to pharmaceutical compositions
comprising the peptides, multimers and conjugates of the invention and a
pharmaceutical acceptable carrier.
The present invention also relates to polyclonal and monoclonal antibodies
that are raised to the peptides, multimers and conjugates described in the
preceding paragraphs.
The present invention also relates to a method of administering a
composition comprising polyclonal or monoclonal antibodies described above
to an individual in an amount effective to reduce HIV infection of
uninfected cells.
The present invention also relates to a vaccine for providing a protective
response in an animal comprising one or more peptides, multimers or
conjugates of the present invention together with a pharmaceutically
acceptable diluent, carrier, or excipient, wherein the vaccine may be
administered in an amount effective to elicit an immune response in an
animal to HIV. In a preferred embodiment, the animal is a mammal. In
another preferred embodiment, the mammal is a human.
DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS
The transitory-nature of the HIV-entry event, and the structures
associated with it, account for the seeming lack of neutralizing epitopes
within gp41. These structural components, which form and function only
during virus entry, and remain unexposed or are not present in the
"native" fusion-inactive envelope complex, constitute a novel set of
neutralizing epitopes within gp41. The present invention involves
immunization with constructs mimicking these highly conserved, gp41
structures involved in virus entry to elicit the production of broadly
neutralizing antibodies targeting these structures. Thus, this invention
is the induction of a humoral immune response targeting these "entry
relevant" gp41 structures.
One aspect of the present invention relates to a method of raising a
broadly neutralizing antibody response to HIV by administering to a mammal
a peptide or polypeptide comprising an amino acid sequence that is capable
of forming a stable coiled-coil solution structure corresponding to or
mimicking the heptad repeat region of gp41 which is located in the
N-helical domain as defined herein. Peptides, or multimers thereof, that
comprise amino acid sequences which correspond to or mimic solution
conformation of the heptad repeat region of gp41 can be employed in this
aspect of the invention. The heptad repeat region of gp41 includes 4
heptad repeats. Preferably, the peptides comprise about 28 to 55 amino
acids of the heptad repeat region of the extracellular domain of HIV gp41
(N-helical domain, (SEQ. ID NO:1)), or multimers thereof. The peptides can
be administered as a small peptide, or conjugated to a larger carrier
protein such as keyhole limpet hemocyanin (KLH), ovalbumin, bovine serum
albumin (BSA) or tetanus toxoid.
Alternatively, peptides forming a stable coiled-coil solution structure
corresponding to or mimicking the heptad repeat region of gp41 can be
employed to form polyclonal or monoclonal antibodies that can be
subsequently administered as therapeutic or prophylactic agents.
To determine whether a particular peptide or multimer will possess a
stable trimeric coiled-coil solution structure corresponding to or
mimicking the heptad repeat region of gp41, the peptide can be tested
according to the methods described in Wild, C., et al., Proc. Natl. Acad.
Sci. USA 89:10537-10541 (1992), fully incorporated by reference herein.
Shown below is the sequence for residues of the HIV-1.sub.LAI gp41 protein
that form the N-helical domain of the protein -- see Original Patent.
Two examples of useful peptides include the peptide P-17, which has the
formula, from amino terminus to carboxy terminus, of -- see Original
Patent.
These peptides are optionally coupled to a larger carrier protein, or
optionally include a terminal protecting group at the N- and/or C-termini.
Useful peptides further include peptides corresponding to P-17 or P-15
that include one or more, preferably 1 to 10 conservative substitutions,
as described below. A number of additional useful N-helical region
peptides are described in the section entitled "Peptides."
A second aspect of the present invention relates to a method of raising a
broadly neutralizing antibody response to HIV by administering to a mammal
a peptide or polypeptide comprising an amino acid sequence that
corresponds to, or mimics, the transmembrane-proximal amphipathic
.alpha.-helical segment of gp41 (C-helical domain, (SEQ ID NO:4)), or a
portion thereof. Useful peptides or polypeptides include an amino acid
sequence that is capable of forming a core six helix bundle when mixed
with a peptide corresponding to the heptad repeat region of gp41, such as
the peptide P-17. Peptides can be tested for the ability to form a core
six helix bundle employing the system and conditions described in Chan, D.
C., et al, Cell 89:263-273 (1997); Lu, M., et al., Nature Struct. Biol.
2:1075-1082 (1995), fully incorporated by reference herein.
Shown below is the amino acid sequence for residues of the HIV-1.sub.LAI
gp41 protein that form the C-helical domain of the protein -- see Original
Patent.
Preferred peptides or multimers thereof, that can be employed in this
aspect of the invention comprise about 6 or more amino acids, preferably
about 24-56 amino acids, of the extracellular C-helical domain of HIV
gp41. The peptides can be administered as a small peptide, or conjugated
to a larger carrier protein such as keyhole limpet hemocyanin (KLH),
ovalbumin, bovine serum albumin (BSA) or tetanus toxoid. This
transmembrane-proximal amphipathic .alpha.-helical segment is exemplified
by the peptides P-16 and P-18, described below.
Alternatively, peptides or polypeptides comprising amino acid sequences
that correspond to, or mimic, the transmembrane-proximal amphipathic
.alpha.-helical segment of gp41, or a portion thereof, can be employed to
form polyclonal or monoclonal antibodies as therapeutic or prophylactic
agents.
Examples of useful peptides for this aspect of the invention include the
peptide P-18 which corresponds to a portion of the transmembrane protein
gp41 from the HIV-1.sub.LAI isolate, and has the 36 amino acid sequence
(reading from amino to carboxy terminus) -- see Original Patent.
These peptides are optionally coupled to
a larger carrier protein. Useful peptides further include peptides
corresponding to P-18 or P-16 that include one or more, preferably 1 to 10
conservative substitutions, as described below. In addition to the
full-length P-18, 36-mer and the full length P-16, the peptides of this
aspect of the invention may include truncations of the P-18 and P-16, as
long as the truncations is capable of forming a six helix bundle when
mixed with P-17. A number of other useful peptides are described in the
section entitled "Peptides," below.
A third aspect of the present invention relates to a method of raising a
broadly neutralizing antibody response to HIV by administering to a mammal
a composition including one or more peptides or polypeptides which
comprise amino acid sequences that are capable of forming solution stable
structures that correspond to, or mimic, the gp41 core six helix bundle.
This bundle forms in gp41 by the interaction of the distal regions of the
transmembrane protein, the heptad repeat region and the amphipathic
.alpha.-helical region segment roughly corresponding to the N-helical
domain and C-helical domain. See FIG. 1 (see Original Patent). The bundle
structures that form in native virus are the result of a trimeric
interaction between three copies each of the heptad repeat region and the
transmembrane-proximal amphipathic .alpha.-helical segment. In the
compositions of the present invention, peptide regions interact with one
another to form a core six helix bundle. This aspect of the invention is
also directed to novel mixtures of peptides and polypeptides, including
multimeric and conjugate structures, wherein said structures form a stable
core helix solution structure.
This aspect of the invention can employ mixtures of (a) one or more
peptides that comprise an amino acid sequence that corresponds to, or
mimics, a stable coiled coil heptad repeat region of gp41; and (b) one or
more peptides that comprise a region that corresponds to, or mimics, the
transmembrane-proximal amphipathic .alpha.-helical segment of gp41. These
mixtures are optionally chemically or oxidatively cross-linked to provide
additional immunogenic structures that may or may not be solution stable.
In addition to physical mixtures, and conventional cross-linking, the
peptides (a) and (b) can be conjugated together via suitable linking
groups, preferably a peptide residue having at least 2, preferably 2 to
25, amino acid residues. Preferred linking groups are formed from
combinations of glycine and serine, or combinations of glycine and
cysteine when further oxidative cross-linking is envisioned.
A preferred embodiment of this aspect of the invention involves raising
antibodies to physical mixtures of P-17 and P-18, P-15 and P-16, P-17 and
P-16 or P-15 and P-18.
The present invention is also directed to a method of raising a broadly
neutralizing antibody response to HIV by administering to a mammal a
composition including one or more novel peptides and proteins, herein
referred to as conjugates, that mimic fusion-active transmembrane protein
structures. These conjugates are formed from peptides and proteins that
comprise:
(a) one or more amino acid sequences of 28 or more amino acids that are
capable of forming a stable coiled-coil solution structure corresponding
to or mimicking the heptad repeat region of gp41; and
(b) one or more amino acid sequences that correspond to, or mimic, an
amino acid sequence of the transmembrane-proximal amphipathic
.alpha.-helical segment of gp41;
wherein
said one or more sequences (a) and (b) are alternately linked to one
another via a peptide bond (amide linkage) or by an amino acid linking
sequence consisting of about 2 to about 25 amino acids. These peptides and
proteins are preferably recombinantly produced.
In a preferred embodiment of this aspect of the invention, one or more of
these conjugates folds and assembles into a structure corresponding to, or
mimicking, the gp41 core six helix bundle.
Non-limiting examples of the novel constructs or conjugates that can be
formed include:
(1) three tandem repeating units consisting of P-17-linker-P-18
(P-17-linker-P-18-linker-P-17-linker-P-18-linker-P-17-linker-P-18),
(2) P-17-linker-P-18-linker-P-17,
(3) P-18-linker-P-17-linker-P-18,
(4) P-17-linker-P-17,
(5) three tandem repeating units consisting of P-15-linker-P-16
(P-15-linker-P-16-linker-P-15-linker-P-16-linker-P-15-linker-P-16),
(6) P-15-linker-P-16-linker-P-15,
(7) P-16-linker-P-15-linker-P-16, and
(8) P-16-linker-P-15;
wherein each linker is an amino acid sequence, which may be the same or
different, of from about 2 to about 25, preferably 2 to about 16 amino
acid residues. Preferred amino acid residues include glycine and serine,
for example (GGGGS).sub.x, (SEQ ID NO:7) wherein x is 1, 2, 3, 4, or 5, or
glycine and cysteine, for example (GGC)y, where y is 1, 2, 3 4 or 5. In
any of the described constructs, P-15 and P-17 are interchangeable and
P-16 and P-18 are interchangeable. An example of such a construct (SEQ ID
NO:77) is shown in FIG. 7 (see Original Patent), along with the
corresponding nucleic acid sequence (SEQ ID NO:78) used for recombinant
expression of the construct.
Alternatively, polyclonal or monoclonal antibodies can be raised against
the immunogenic mixtures and conjugates described in this aspect of the
invention. Such antibodies can be employed as therapeutic or prophylactic
agents.
In preferred aspects of the invention, the methods can be employed to
immunize an HIV-1-infected individual such that levels of HIV-1 will be
reduced in such individual. In another aspect, the methods can be employed
to immunize a non-HIV-1-infected individual so that, following a
subsequent exposure to HIV-1 that would normally result in HIV-1
infection, the levels of HIV-1 will be non-detectable using current
diagnostic tests.
Immunogen Preparation
Induction and interpretation of a humoral immune response directed against
gp41 structural epitopes requires both immunogen preparation and antibody
characterization. Synthetic peptides and recombinant proteins can both be
used to generate antigenic structures corresponding to gp41 fusion active
domains.
In one aspect of the invention, target immunogens model the heptad repeat
region delineated by the P-17 peptide (capable of forming a trimeric
coiled-coil structure). In another aspect of the invention, target
immunogens model the transmembrane-proximal amphipathic .alpha.-helical
segment delineated by the P-18 peptide. This region in the absence of the
coiled-coil core exhibits random coil solution structure. (Wild, C., et
al., Proc. Natl. Acad. Sci. USA 89:10537-10541 (1992); Wild, C., et al.,
AIDS Res. Hum. Retroviruses 9:1051-1053 (1993); Wild, C., et al., Proc.
Natl. Acad. Sci. USA 91:9770-9774 (1994)). In another aspect, combinations
of these target imnmunogens are employed for raising antibodies.
In another aspect of the invention the target immunogen is the six helix
hydrophobic bundle. This bundle is formed by the specific association of
these two distal regions of the ectodomain of gp41 (Chan, D. C., et al,
Cell 89:263-273 (1997); Lu, M., et al., Nature Struct. Biol. 2:1075-1082
(1995)). These constructs will mimic entry determinants which form and
function during HIV-1 entry.
Synthetic Methods of Immunogen Preparation
Immunogens can be prepared by several different routes. The constructs can
be generated from synthetic peptides. This involves preparing each
sequence as a peptide monomer followed by post-synthetic modifications to
generate the appropriate oligomeric structures. The peptides are
synthesized by standard solid-phase methodology. To generate a trimeric
coiled-coil structure, the P-17 peptide monomer is solubilized under
conditions which favor oligomerization. These conditions include a 20 mM
phosphate buffer, pH 4.5 and a peptide concentration of 100 .mu.M (Wild,
C., et al., Proc. Natl. Acad. Sci. USA 89:10537-10541 (1992)). The
structure which forms under these conditions can be optionally stabilized
by chemical crosslinking, for example using gluteraldehyde.
Alternatively, a protocol which makes use of intermolecular disulfide bond
formation to stabilize the trimeric coiled-coil structure can be employed
in order to avoid any disruptive effect the cross-linking process might
have on the structural components of this construct. This approach uses
the oxidation of appropriately positioned cysteine residues within the
peptide sequence to stabilize the oligomeric structure. This requires the
addition of a short linker sequence to the N terminus of the P-17 peptide.
The trimeric coiled-coil structure which is formed by this approach will
be stabilized by the interaction of the cysteine residues. The trimer is
separated from higher order oligomeric forms, as well as residual monomer,
by size exclusion chromatography and characterized by analytical
ultracentrifugation. These covalently stabilized coiled-coil oligomers
serve as the core structure for preparation of a six helix bundle.
To accomplish preparation of a six helix bundle, an excess of P-18 peptide
is added to the purified core structure. After incubation the reaction
mixture is subjected to a cross-linking procedure to stabilize the higher
order products of the specific association of these two peptides. The
desired material is isolated by size exclusion chromatography and
characterized by analytical ultracentrifugation. The immunogen
corresponding only to the P-18 peptide requires no specific post-synthetic
modifications. Using this approach, three separate target constructs are
generated rapidly and in large amounts.
Recombinant Methods of Immunogen Preparation
Another method for preparing target immunogens involves the use of a
bacterial expression vector to generate recombinant gp41 fragments. The
use of an expression vector to produce the peptides and polypeptides
capable of forming the entry-relevant immunogens of the present invention
adds a level of versatility to immunogen preparation.
New and modified forms of the antigenic targets are contemplated as the
structural determinants of HIV-1 entry are better understood. The
recombinant approach readily accommodates these changes. Also, this method
of preparation allows for the ready modification of the various constructs
(i.e. the addition of T- or B-cell epitopes to the recombinant gp41
fragments to increase immunogenicity). In addition, a form of the six
helix hydrophobic core structure is generated which will not require
additional stabilization, since determining the antigenic nature of this
structure is important. Finally, these recombinant constructs can be
employed as a tool to provide valuable insights into additional structural
components which form and function in gp41 during the process of virus
entry.
Thus, as part of the invention, novel fusion polypeptides (conjugates) are
also provided, as are vectors, host cells and recombinant methods for
producing the same. The present invention provides isolated nucleic acid
molecules comprising a polynucleotide encoding the conjugates of the
invention.
The present invention also relates to recombinant vectors, which include
the isolated nucleic acid molecules of the present invention, and to host
cells containing the recombinant vectors, as well as to methods of making
such vectors and host cells and for using them for production of fusion
polypeptides or peptides by recombinant techniques.
The polynucleotides may be joined to a vector containing a selectable
marker for propagation in a host. Generally, a plasmid vector is
introduced in a precipitate, such as a calcium phosphate precipitate, or
in a complex with a charged lipid. If the vector is a virus, it may be
packaged in vitro using an appropriate packaging cell line and then
transduced into host cells.
The DNA insert should be operatively linked to an appropriate promoter,
such as that described herein. Other suitable promoters will be known to
the skilled artisan. The expression constructs will further contain sites
for transcription initiation, termination and, in the transcribed region,
a ribosome binding site for translation. The coding portion of the mature
transcripts expressed by the constructs will preferably include a
translation initiating at the beginning and a termination codon (UAA, UGA
or UAG) appropriately positioned at the end of the polypeptide to be
translated.
As indicated, the expression vectors will preferably include at least one
selectable marker. Such markers include dihydrofolate reductase or
neomycin resistance for eukaryotic cell culture and tetracycline or
ampicillin resistance genes for culturing in E. coli and other bacteria.
Representative examples of appropriate hosts include, but are not limited
to, bacterial cells, such as E. coli, Streptomyces and Salmonella
typhimurium cells; fungal cells, such as yeast cells; insect cells such as
Drosophila S2 and Spodoptera Sf9 cells; animal cells such as CHO, COS and
Bowes melanoma cells; and plant cells. Appropriate culture mediums and
conditions for the above-described host cells are known in the art.
Introduction of the construct into the host cell can be effected by
calcium phosphate transfection, DEAE-dextran mediated transfection,
cationic lipid-mediated transfection, electroporation, transduction,
infection or other methods. Such methods are described in many standard
laboratory manuals, such as Davis et al., Basic Methods In Molecular
Biology (1986).
The polypeptide may be expressed in a modified form, such as a fusion
protein, and may include not only secretion signals, but also additional
heterologous functional regions. For instance, a region of additional
amino acids, particularly charged amino acids, may be added to the
N-terminus of the polypeptide to improve stability and persistence in the
host cell, during purification, or during subsequent handling and storage.
Also, peptide moieties may be added to the polypeptide to facilitate
purification. Such regions may be removed prior to final preparation of
the polypeptide. The addition of peptide moieties to polypeptides to
engender secretion or excretion, to improve stability and to facilitate
purification, among others, are familiar and routine techniques in the
art.
The fusion protein can be recovered and purified from recombinant cell
cultures by well-known methods including ammonium sulfate or ethanol
precipitation, acid extraction, anion or cation exchange chromatography,
phosphocellulose chromatography, hydrophobic interaction chromatography,
affinity chromatography, hydroxylapatite chromatography and lectin
chromatography. Most preferably, high performance liquid chromatography ("HPLC")
is employed for purification. Depending upon the host employed in a
recombinant production procedure, the polypeptides of the present
invention may be glycosylated or may be non-glycosylated. In addition,
polypeptides of the invention may also include an initial modified
methionine residue, in some cases as a result of host-mediated processes.
A bacterial expression vector (kindly provided by Dr. Terrance Oas, Duke
University) was developed specifically for the expression of small
proteins. This plasmid, pTCLE-G2C, is based on pAED4, a T7 expression
vector. A modified TrpLE (Yansura, D. G., Methods Enzymol. 185:161-166
(1990)) fusion peptide (provided by Dr. Peter Kim) was inserted after the
T7 promoter (Studier, F. W., et al., Methods Enzymol. 185:60-89 (1990)).
There is an in frame Nde I site at the end of the TrpLE peptide that
encodes a methionine cyanogen bromide (CNBr) cleavage site. This vector
was used in an earlier study to express a recombinant form of the P-17
peptide (Calderone, T. L., et al., J. Mol. Biol. 262:407412 (1996)) and
has been modified to expresses the P-18 peptide.
To generate a six helix hydrophobic core structure, several combinations
of the heptad repeat (for example, P-17 or P-15) region and the
amphipathic .alpha.-helical (for example, P-16 or P-18) segment of gp41
are separated by a flexible linker of amino acid residues. For example, (GGGGS).sub.3
(SEQ ID NO:7) can be encoded into the vector. This is accomplished by
standard PCR methods. The (GGGGS).sub.3 (SEQ ID NO:7) linker motif is
encoded by a synthetic oligonucleotide which is ligated between the P-17
and P-18 encoding regions of the expression vector.
All constructions are characterized by multiple restriction enzyme digests
and sequencing. The success of this approach to attain multicomponent
interactions has been recently demonstrated (Huang, B., et al., J. Immunol.
158:216-225 (1997)).
Examples of the novel constructs or conjugates that can be formed by the
method are described above.
Based on the parallel orientation of the subunits of the coiled coil core
and the antiparallel orientation of the amphipathic .alpha.-helical
segment in the six helix bundle, these constructs fold to generate the
desired structures. Following expression, the recombinant gp41 fragments
are isolated as inclusion bodies, cleaved from the leader sequence by
cyanogen bromide, and separated from the leader by-product by size
exclusion chromatography step (SUPERDEX 75). This protocol has been
successfully used in the purification of large quantities of a modified
form of the P-17 peptide (Calderone, T. L., et al., J. Mol. Biol.
262:407-412 (1996)). Recombinant constructs (2) and (3) are mixed in equal
molar quantities under non-denaturing conditions to generate a six-helix
hydrophobic core structure. Constructs (1) and (4) will fold either intra-
or intermolecularly to generate the same or similar structures (see FIG. 3 (see Original Patent)
for the folding process). The desired product is purified by size
exclusion chromatography on a SUPERDEX 75 FPLC column and characterized by
molecular weight under using a Beckman Model XL-A analytical
ultracentrifuge.
Claim 1 of 16 Claims
1. A conjugate polypeptide
formed from two or more amino acid sequences that comprise: (a) a first gp41
polypeptide having an amino acid sequence corresponding to a polypeptide
comprising the amino acid sequence of SEQ ID NO:2 or SEQ ID NO:3 and is
capable of forming a stable coiled-coil structure; and (b) a second gp41
polypeptide having an amino acid sequence corresponding to a polypeptide
comprising the amino acid sequence of SEQ ID NO:5 or SEQ ID NO:6 and is
capable of forming an amphipathic .alpha. helical segment; wherein at least
three polypeptides of (a) and (b) are alternately linked to one another via
a peptide bond to form the conjugate polypeptide or at least two
polypeptides of (a) and (b) are linked by an amino acid linking sequence
consisting of about 2 to about 25 amino acids to form the conjugate
polypeptides.
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