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Title: Methods for identifying
compounds that modulate vigilance states
United States Patent: 7,468,178
Issued: December 23, 2008
Inventors: Tononi; Giulio
(San Diego, CA), Cirelli; Chiara (San Diego, CA), Shaw; Paul J. (San
Diego, CA), Greenspan; Ralph J. (Coronado, CA)
Assignee: Neurosciences
Research Foundation, Inc. (San Diego, CA)
Appl. No.:
10/830,909
Filed: April 22, 2004
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Woodbury College's
Master of Science in Law
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Abstract
The invention provides a method of
identifying a compound that alters vigilance. The method consists of
contacting an invertebrate with a candidate compound, evaluating a
vigilance property in the contacted invertebrate, and determining if the
candidate compound alters the vigilance property in the contacted
invertebrate. A candidate compound that alters the vigilance property in
the contacted invertebrate is identified as a compound that alters
vigilance. The invention also provides a method of identifying a vigilance
enhancing compound that modulates homeostatic regulation or a vigilance
diminishing compound that modulates homeostatic regulation. The method
consists of contacting an invertebrate with a compound that increases or
decreases vigilance, and determining the effect of the compound on a
homeostatic regulatory property of vigilance. A compound that alters the
homeostatic regulatory property is characterized as being a vigilance
enhancing compound or a vigilance diminishing compound that modulates
homeostatic regulation.
Description of the
Invention
SUMMARY OF THE INVENTION
The invention provides a method of identifying a compound that alters
vigilance. The method consists of contacting an invertebrate with a
candidate compound, evaluating a vigilance property in the contacted
invertebrate, and determining if the candidate compound alters the vigilance
property in the contacted invertebrate. A candidate compound that alters the
vigilance property in the contacted invertebrate is identified as a compound
that alters vigilance.
In one embodiment, the vigilance property evaluated is a behavioral
property, including activity, latency to sleep or arousal threshold. In
another embodiment, the vigilance property evaluated is a molecular
property, including expression of one or more vigilance-modulated genes.
The invention also provides a method of identifying a vigilance enhancing
compound that modulates homeostatic regulation. The method consists of
contacting an invertebrate with a compound that increases vigilance, and
determining the effect of the compound on a homeostatic regulatory property
of vigilance. A compound that alters the homeostatic regulatory property is
characterized as being a vigilance enhancing compound that modulates
homeostatic regulation.
Also provided is a method of identifying a vigilance diminishing compound
that modulates homeostatic regulation. The method consists of contacting an
invertebrate with a compound that decreases vigilance, and determining the
effect of the compound on a homeostatic regulatory property of vigilance. A
compound that alters the homeostatic regulatory property is characterized as
being a vigilance diminishing compound that modulates homeostatic
regulation.
DETAILED DESCRIPTION OF THE INVENTION
The present invention provides methods of rapidly and efficiently
identifying compounds that alter vigilance, including compounds that promote
sleep, prevent sleep, or increase vigilance. The compounds identified by the
methods of the invention can thus be used to treat individuals suffering
from psychological, physiological or genetic conditions that deprive them of
restorative sleep or that cause excessive sleepiness. These compounds can
also be used to prolong wakefulness, such as when it is desired to extend an
individual's productivity, or to increase attentiveness, learning or memory.
Sleep in mammals has been defined by several criteria, including
electrophysiological and behavioral criteria. Behavioral criteria for sleep
include sustained quiescence, increased arousal threshold, and "sleep
rebound," or increased sleep or increased sleep intensity following
prolonged waking. The criterion of sleep rebound indicates that sleep is
under homeostatic control and is thus distinguishable from mere inactivity.
Recently, physiological correlates of sleep in mammals have been extended to
the level of gene expression. Molecular screening has revealed that brain
levels of mitochondrial enzymes and of several genes implicated in neural
plasticity are high during waking and low during sleep (see, for example,
(see Cirelli et al., Mol. Brain Res. 56:293 (1998); Cirelli et al., Ann.
Med. 31:117 (1999); and Cirelli et al., Sleep 22(S):113 (1999)). Therefore,
sleep in mammals can also be characterized by a distinct pattern of gene
expression.
Although it is well-known that most organisms exhibit circadian
rest-activity cycles, prior to the present invention it was not known that
invertebrates exhibit a sleep-like state that is comparable, by behavioral,
physiological, developmental, molecular and genetic criteria, to mammalian
sleep. This sleep-like state in invertebrates is henceforth referred to as
"sleep."
As described herein, invertebrate sleep is very similar, by behavioral
criteria, to mammalian sleep. More specifically, as shown in Example I,
sleep in an exemplary invertebrate, Drosophila melanogaster, is associated
with sustained behavioral quiescence and increased arousal threshold.
Additionally, sleep deprivation during the normal sleep period led to a
rebound effect comparable to sleep rebound in mammals, indicating that sleep
is under similar homeostatic control in invertebrates.
Furthermore, as described herein, sleep in invertebrates is dependent on
age, and follows a similar pattern of age dependency as mammalian sleep,
indicating that sleep in invertebrates is developmentally regulated.
Likewise, sleep remains homeostatically regulated in older invertebrates, as
it is in older mammals (see Example II). Additionally, sleep and wake in
invertebrates are subject to pharmacological manipulation using compounds
that are known to act as stimulants or hypnotics in mammals (see Example
III).
Furthermore, of importance to the determination that sleep and wake in
invertebrates are truly similar to mammalian sleep and wake, it is also
described herein that several classes of genes, and several individual
genes, whose regulation is dependent on vigilance state in mammals are
similarly regulated in invertebrates (see Example IV). Additionally, as
disclosed herein, mutations in genes that regulate sleep in invertebrates
affect vigilance properties, including homeostatic regulation of sleep (see
Example IV). Likewise, mutations have been identified in mammalian genes
that affect sleep, including orexin (see Chemelli et al., Cell 98:437-451
(1999)), indicating that in both invertebrates and mammals, vigilance is
under genetic control.
The discovery that invertebrates exhibit sleep and wake states that are
similar by behavioral, developmental, pharmacological, genetic and molecular
criteria to mammalian sleep and wake, provides a basis for the methods
disclosed herein of identifying novel compounds that can be used to modulate
vigilance in mammals by screening compounds for their effect on vigilance
properties in invertebrates.
The invention provides a method of identifying a compound that alters
vigilance. The method consists of contacting an invertebrate with a
candidate compound, evaluating a vigilance property in the contacted
invertebrate, and determining if the candidate compound alters the vigilance
property in the contacted invertebrate A candidate compound that alters the
vigilance property in the contacted invertebrate is identified as a compound
that alters vigilance.
As used herein, the term "vigilance" is intended to mean the degree or
extent to which an organism exhibits sleep or wake behaviors. Thus, the term
"altering vigilance" is intended to encompass a change in state from wake to
sleep or vice-versa, as well as any increase or decrease in intensity or
duration of behaviors associated with a sleep or wake state.
The methods of the invention can be used to identify compounds that either
increase or decrease vigilance. A compound that increases vigilance can, for
example, cause the animal to wake from sleep, prolong periods of
wakefulness, prolong normal latency to sleep, restore normal sleep patterns
following sleep deprivation, or enhance beneficial wake-like
characteristics, such as alertness, responsiveness to stimuli, energy, and
ability to learn and remember. In contrast, a compound that decreases
vigilance can, for example, cause an animal to sleep, prolong periods of
sleep, promote restful sleep, decrease latency to sleep, or decrease
unwanted wake-like characteristics, such as anxiety and hyperactivity.
As used herein, the term "vigilance property" is intended to mean a
behavioral, physiological or molecular property in invertebrates that is
correlated with mammalian sleep and wake states. As described further below,
invertebrates can exhibit a variety of behavioral properties that are
closely correlated with mammalian sleep and wake states, including activity,
arousal threshold and latency to sleep. Additionally, as described further
below, invertebrates can exhibit a variety of molecular properties that are
closely correlated with mammalian sleep and wake states, including
expression of vigilance-modulated genes. Invertebrates can also exhibit
physiological properties that are closely correlated with mammalian sleep,
including the frequency, type and intensity of neuronal signals, heart rate,
and the like.
Generally, invertebrates exhibit circadian patterns of rest and activity,
with most rest occurring during the night in diurnal animals and most
activity occurring during the day. In contrast, in nocturnal animals most
rest occurs during the day, whereas most activity takes place during the
night. Under laboratory conditions, it is possible to regulate the circadian
rest-activity cycle by regulating the length of light and dark, and thus
establish what are referred to herein as "normal wake periods" and "normal
sleep periods." For example, in Drosophila melanogaster subjected to a 12
h:12 h light:dark cycle, the "normal wake period" is the 12 hour light
period, whereas the "normal sleep period" is the 12 hour dark period. Those
skilled in the art can readily determine or establish normal wake and sleep
periods for other invertebrates.
An example of a behavioral vigilance property that can be evaluated in
invertebrates is activity during all or part of a normal wake or sleep
period. As used herein, the term "activity" is intended to encompass all
behavioral activities normally exhibited by that invertebrate including, for
example, locomoting, movements of body parts, grooming, eating, and the
like, in contrast to "inactivity" or "rest." Activity can be evaluated
throughout a normal wake period or throughout a normal sleep period, or
both, or evaluated for only part of a normal wake or sleep period, such as
for at least 10 minutes, 30 minutes, 1, 2, 4, 6, 8 or 12 hours. Once
activity during a normal sleep period or normal wake period is established,
those skilled in the art can readily evaluate whether a candidate compound
increases or decreases intensity of activity or alters the pattern of
activity during all or part of that period.
For certain applications of the method, it will be preferable to evaluate
activity following sleep deprivation. As described previously, sleep rebound
following sleep deprivation is a characteristic of homeostatically regulated
sleep. Thus, by establishing the normal sleep rebound behavior of the
invertebrate, those skilled in the art can readily evaluate whether a
candidate compound affects the normal homeostatic regulation of sleep.
As used herein, the term "sleep deprivation" refers to depriving the animal
of rest. This deprivation is generally for a sufficient period of time
during a normal sleep period to result in a detectable decrease in activity,
increase in sleep, or increase in intensity of sleep during the subsequeent
period, also known as a "sleep rebound" effect. In general, sleep
deprivation results from depriving the animal of rest during at least 10%,
such as at least 25%, including from 50% to 100% of the normal sleep period.
Any method appropriate for the particular invertebrate can be used to
deprive an animal of sleep. As described in Example I, Drosophila
melanogaster can be sleep-deprived for the entire normal sleep period, using
manual or automated physical stimulation, and the amount, pattern and
intensity of activity indicative of sleep rebound evaluated (see FIG. 2A, see Original Patent).
In other organisms, it may be preferable to sleep-deprive the animals using
electrical stimulation, noise, or other stimuli, for longer or shorter
periods. The time period and method for sleep-depriving an animal can be
determined by those skilled in the art for a particular application.
Various manual and automated assays can be used to evaluate intensity and
patterns of activity. For example, activity can be detected visually, either
by direct observation or by time-lapse photography. Alternatively, an
ultrasound monitoring system can be used, such as the system shown in FIG.
1A
(see Original Patent) and described in Example I
(see Original Patent). Such a system is advantageous in detecting very
small movements of the animals' body parts and, as shown in FIG. 1B
(see Original Patent), the output is closely correlated with visual
observations. An example of the activity of Drosophila melanogaster during a
normal wake period (12 hour light period) and a normal sleep period (12 hour
dark period), as evaluated using an ultrasound monitoring system, is shown
in FIG. 1C
(see Original Patent).
As a further example, an infrared monitoring system, such as the infrared
Drosophila Activity Monitoring System available from Trikinetics (described
in M. Hamblen et al., J. Neurogen. 3:249 (1986)), can be used. As described
in Example I, below, an infrared monitoring system is advantageous when
simultaneously evaluating activity in large numbers of invertebrates. An
example of the activity of a population of Drosophila melanogaster during a
normal wake period (12 hour light period) and a normal sleep period (12 hour
dark period), as evaluated using an ultrasound monitoring system, is shown
in FIG. 1C
(see Original Patent).
Those skilled in the art can determine an appropriate method to evaluate
invertebrate activity in a particular application of the method, depending
on considerations such as the size and number of invertebrates, their normal
activity level, the intended number of data points, and whether a
quantitative or qualitative assessment of activity is desired.
A further example of a behavioral vigilance property that can be evaluated
in invertebrates is latency to sleep. As used herein, the term "latency to
sleep" refers to the period of time to the first rest bout following the
change from the normal wake period to the normal sleep period (ie. from
light to dark in diurnal animals, or from dark to light in nocturnal
animals). As shown in FIG. 4E
(see Original Patent), latency to sleep in control Drosophila melanogaster
was about 40 minutes. If desired, latency to sleep following sleep
deprivation can also be established. Once normal latency to sleep, or
latency to sleep following sleep deprivation are established for a
particular invertebrate, one skilled in the art can evaluate whether a
candidate compound increases or decreases this vigilance property.
Another example of a behavioral vigilance property that can be evaluated in
invertebrates is arousal threshold. As used herein, the term "arousal
threshold" refers to the amount of stimulation required to elicit a
behavioral response, such as movement. Any reproducible stimulus can be used
to evaluate arousal threshold including, for example, vibratory stimulus,
noise, electrical stimulation, heat, or light.
Invertebrates that are in a wake state will exhibit a behavioral response at
a lower level of stimulation than invertebrates that are in a sleep state.
For example, as described in Example I, below, when subjected to vibratory
stimuli of varying intensities, Drosophila melanogaster that were in a
wake-like state, as determined by activity criteria, responded to low-level
stimuli that did not elicit a response in flies that were in a sleep state.
Furthermore, an animal that is deeply asleep will exhibit an increased
arousal threshold compared to an animal that less deeply asleep.
Accordingly, arousal threshold is a measure of sleep versus wake, as well as
intensity of sleep. Once normal arousal threshold associated with sleep and
wake are established for a particular invertebrate, those skilled in the art
can readily evaluate whether a candidate compound increases or decreases
this vigilance property.
Other vigilance properties that can be measured in invertebrates include
molecular properties correlated with sleep and wake states. As used herein,
the term "molecular property" refers to any property that can be evaluated
in invertebrate tissues, cells or extracts, including, for example,
production or turnover of a second messengers, GTP hydrolysis, influx or
efflux of ions or amino acids, membrane voltage, protein phosphorylation or
glycosylation, membrane voltage, enzyme activity, protein-protein
interactions., protein secretion, and gene expression.
A specific example of a molecular vigilance property that can be evaluated
in invertebrates is expression of one or more vigilance-modulated genes. As
used herein, the term "expression" is intended to encompass expression at
the mRNA or polypeptide level. Accordingly, expression of a
vigilance-modulated gene can be evaluated by any qualitative or quantitative
method that detects mRNA, protein or activity, including methods described
further below. Once the abundance or pattern of expression of
vigilance-modulated genes are established for a particular invertebrate,
those skilled in the art can readily evaluate whether a candidate compound
increases or decreases expression of one or more vigilance-modulated genes.
As used herein, the term "vigilance-modulated gene" refers to a gene whose
expression level varies according to vigilance state. For example, the
expression level of a vigilance-modulated gene can normally vary by at least
about 10%, such as at least 25%, or at least about 50%, including at least
about 100%, 250%, 500%, 1000% more between sleep and wake. As described
herein, at least about 1% of the transcripts in invertebrates are modulated
by vigilance state and, consequently, correspond to vigilance-modulated
genes. Therefore, in the methods of the invention one can evaluate
expression of at least one vigilance-modulated gene, such as at least 2, 5,
10, 20, 50, 100 or more vigilance-modulated genes. Although not necessary
for the practice of the invention, as described below, these genes can be
cloned and/or their sequences determined using standard molecular biology
procedures.
If desired for a particular application of the method, genes whose
expression is normally upregulated in the wake-like state, or genes whose
expression is normally upregulated in sleep, or any combination, can be
evaluated.
Exemplary vigilance-modulated genes in Drosophila melanogaster include a
homolog of mammalian Fatty acid synthase (Fas); Cytochrome oxidase C,
subunit I; Cytochrome p450 (Cyp4e2); BiP; and arylalkyamine N-acetyl
transferase (Dat). Each of these genes was expressed at higher levels during
waking than during sleep (see Example IV). In contrast, a gene designated
"Rest" was 45% higher during sleep than during rest.
As disclosed herein, there is similarity between vigilance-modulated gene
expression in rats and in Drosophila melanogaster, both in terms of number
and type of genes that are modulated. For example, as described in Example
IV, below, Cytochrome oxidase C, subunit I shows a rapid increase in
expression during the first few hours of waking in both rats and Drosophila.
Likewise, expression of a Drosophila and a rat Cytochrome P450 were
similarly upregulated in waking and sleep deprivation. Therefore,
vigilance-modulated genes in invertebrates include homologs of genes whose
expression levels vary with the vigilance state of mammals.
A variety of vigilance-modulated genes in rats are described in Cirelli et
al., Mol. Brain Res. 56, 293 (1998); Cirelli et al., Ann. Med. 31:117
(1999); Cirelli et al., Sleep 22(S):113 (1999) and include, for example,
immediate-early genes, transcription factors and chaperones (e.g. NGFI-A,
NGFI-B, Zn-15 related zinc finger, Arc, JunB and IER5); mitochondrial genes
(e.g. Cytochrome oxidase C subunit 1, Cytochrome oxidase C subunit IV, NADH
dehydrogenase subunit 2, 12S rRNA and F1-ATPase subunit alpha; and other
genes, such as neurogranin, bone morphogenetic protein 2, glucose-regulated
protein 78, brain-derived neurotrophic factor, interleukin-1.beta., dendrin,
and Ca.sup.++/calmodulin-dependent protein kinase II (.alpha.-subunit) Other
vigilance-modulated genes in rats include Cytochrome P450 (Cyp4F5),
AA117313, aryl sulfotransferase IV, human breast autoantigen homolog,
KIAA313 homolog, and membrane protein E25. Therefore, invertebrate homologs
of each of these genes are considered to be vigilance-modulated genes.
Those skilled in the art can determine the extent of identity or similarity
between two genes needed to establish that an invertebrate sequence is the
homolog of a mammalian vigilance-modulated gene. Generally, homologous genes
will encode polypeptides having at least about 25% identity, such as at
least about 30%, 40%, 50%, 75% or greater identity across the entire
sequence, or a functional domain thereof. Methods for cloning homologs from
any invertebrate species, using PCR or library screening, are well known in
the art, and are described, for example, in standard molecular biology
manuals such as Sambrook et al., Molecular Cloning: A Laboratory Manual,
Cold Spring Harbor Laboratory, New York (1992) and in Ansubel et al.,
Current Protocols in Molecular Biology, John Wiley and Sons, Baltimore, Md.
(1998).
Another example of a molecular vigilance property that can be evaluated in
invertebrates is function of one or more vigilance-altering genes. As used
herein, the term "vigilance-altering gene" refers to a gene whose expression
level can, but does not need to, vary with vigilance state, but whose
function influences or is required for inducing or maintaining a vigilance
level or a vigilance property. Exemplary functions of a vigilance-altering
gene that can be evaluated include transcriptional or translational
regulatory activity, and phosphorylation, dephosphorylation, glycosylation
or other post-translational modification.
Vigilance-modulated genes and vigilance-altering genes can be identified, or
their roles confirmed, by a variety of methods, including genetic methods.
For example, animals can be generated or identified with mutations at
selected or random loci, and their vigilance properties evaluated in order
to determine whether vigilance-modulated or vigilance-altering genes map to
these loci. For example, as described in Example IV, below, the gene for
arylalkylamine N-acetyl transferase (also known as dopamine
acetyltransferase, or Dat) is both a vigilance-modulated gene and a
vigilance-altering gene in invertebrates. Drosophila homozygous for a
naturally-occurring hypomorphic allele of this gene, Dat.sup.lo, exhibit a
sleep rebound following sleep deprivation that is much greater than in
wild-type flies, indicating that the Dat gene functions in the homeostatic
regulation of sleep. Drosophila hemizygous for the Dat.sup.lo mutation,
generated by crossing homozygotes with Drosophila deficient at the Dat locus
(Df), exhibit an even more severe sleep rebound effect. Other vigilance
modulated genes and vigilance-altering genes can be identified, or their
roles confirmed, by similar methods.
As described in Example IV, below, Dopa decarboxylase (Ddc) is a further
example of a vigilance-altering gene whose function affects homeostatic
regulation of sleep. More specifically, the amount of Ddc enzymatic activity
in the invertebrate is directly correlated with the amount of sleep rebound
exhibited by the animal following sleep deprivation, with animals severely
mutant at the Ddc locus exhibiting less rebound than more mildly affected
flies, and mildly affected flies exhibiting less rebound than wild-type
flies.
Genetic methods of identifying new vigilance-modulated or vigilance-altering
genes that are applicable to a variety of invertebrates are known in the
art. For example, the invertebrate can be mutagenized using chemicals,
radiation or insertions (e.g. transposons, such as P element mutagenesis),
appropriate crosses performed, and the progeny screened for phenotypic
differences in vigilance properties compared with normal controls. The gene
can then be identified by a variety of methods including, for example,
linkage analysis or rescue of the gene targeted by the inserted element.
Genetic methods of identifying genes are described for Drosophila, for
example, in Greenspan, Fly Pushing: The Theory and Practice of Drosophila
Genetics, Cold Spring Harbor Laboratory Press (1997).
There is a distinction between genes that are modulated by vigilance state
and genes that are modulated by circadian rhythms. Thus, a gene that is
modulated by vigilance state will have a particular expression level during
a normal wake period that is similar to the expression level following sleep
deprivation, and a different expression level during a normal sleep period.
In contrast, a gene that is modulated by circadian rhythms will have a
particular expression level during the light period, and a different
expression level during the dark period, independent of the vigilance state
of the animal. As shown in Example IV, below, D-fos is an example of a gene
whose expression is modulated by circadian rhythm rather than by vigilance
state.
Assays to evaluate expression of vigilance-modulated genes can involve
sacrificing the animal at the appropriate time, such as during a normal wake
period, during a normal sleep period or following sleep deprivation,
homogenizing the entire animal, or a portion containing the brain or sensory
organs, and extracting either mRNA or proteins therefrom. Alternatively,
such assays can be performed in biopsied tissue from the invertebrate.
A variety of assays well known in the art can be used to evaluate expression
of particular vigilance-modulated genes, including the genes described
above. Assays that detect mRNA expression generally involve hybridization of
a detectable agent, such as a complementary primer or probe, to the nucleic
acid molecule. Such assays include, for example, Northern or dot blot
analysis, primer extension, RNase protection assays, reverse-transcription
PCR, competitive PCR, real-time quantitative PCR (TaqMan PCR), and nucleic
acid array analysis.
Additionally, constructs containing the promoter of a vigilance-modulated
gene and a reporter gene (e.g. .beta.-galactosidase, green fluorescent
protein, luciferase) can be made by known methods, and used to generate
transgenic invertebrates. In such transgenic invertebrates, expression of
the reporter gene is a marker for expression of the vigilance-modulated
gene.
Assays that detect protein expression can also be used to evaluate
expression of particular vigilance-modulated genes. Such assays generally
involve binding of a detectable agent, such as an antibody or selective
binding agent, to the polypeptide in a sample of cells or tissue from the
animal. Protein assays include, for example, immunohistochemistry,
immunofluorescence, ELISA assays, immunoprecipitation, and immunoblot
analysis.
Those skilled in the art will appreciate that the methods of the invention
can be practiced in the absence of knowledge of the sequence or function of
the vigilance-modulated genes whose expression is evaluated. Expression of
vigilance-modulated genes can thus be evaluated using assays that examine
overall patterns of gene expression characteristic of vigilance state. It
will be understood that as these vigilance-modulated genes are identified or
sequenced, specific probes, primers, antibodies and other binding agents can
be used to evaluate their expression more specifically using any of the
above detection methods.
One assay to examine-patterns of expression of vigilance-modulated genes,
that does not require prior knowledge of their sequence, is mRNA
differential display, which is described, for example, in Cirelli et al.,
Mol. Brain Res. 56:293 (1998) and exemplified in invertebrates in Example
IV, below. In such a method, RNA from the animal is reverse-transcribed and
amplified by PCR using a particular combination of arbitrary primers. A
detectable label, such as an enzyme, biotin, fluorescent dye or a
radiolabel, is incorporated into the amplification products. The labeled
products are then separated by size, such as on acrylamide gels, and
detected by any method appropriate for detecting the label, including
autoradiography, phosphoimaging or the like.
Such a method allows concurrent examination of expression of thousands of
RNA species, the vast majority of which are expected not to be modulated by
vigilance state. However, as described in Example IV, below, there will be a
characteristic, reproducible banding pattern associated with vigilance
state. It can be readily determined whether a particular candidate compound
alters this pattern of gene expression, such as by increasing or decreasing
the intensity of vigilance-modulated bands.
A further assay to examine patterns of expression of vigilance-modulated
genes is array analysis, in which nucleic acids representative of all or a
portion of the genome of the invertebrate, or representative of all or a
portion of expressed genes of the invertebrate, are attached to a solid
support, such as a filter, glass slide or a chip. Detectably labeled probes,
such as cDNA probes, are then prepared from mRNA of an animal, and
hybridized to the array to generate a characteristic, reproducible pattern
of spots associated with vigilance state. It can be readily determined
whether a particular candidate compound alters this pattern of gene
expression, such as by increasing or decreasing the intensity of
vigilance-modulated spots.
Following identification of patterns of vigilance-modulated gene expression,
those skilled in the art can clone the genes, if desired, using standard
molecular biology approaches. For example, a vigilance-modulated band
identified by differential display can be eluted from a gel and sequenced,
or used to probe a library to identify the corresponding cDNA or genomic
DNA. Likewise, a vigilance-modulated gene from an array can be identified
based on its known position on the array, or cloned by PCR or by probing a
library.
Given the teachings described herein that behavioral vigilance properties
are closely correlated with molecular vigilance properties, and that
behavioral and molecular properties are highly conserved across disparate
species, for example, mammals and flies, it is understood that the invention
can be practiced using any invertebrate that exhibits at least one
behavioral or one molecular vigilance property that is susceptible to
evaluation or measurement.
As disclosed herein, Drosophila melanogaster is an example of an
invertebrate that exhibits a variety of vigilance properties that can be
evaluated, including homeostatically regulated activity, arousal threshold,
latency to sleep, and expression of vigilance-modulated genes. Those skilled
in the art understand that other Drosophila species are also likely to
exhibit similar vigilance properties, including D. simulans, D. virilis, D.
pseudoobscura D. funebris, D. immigrans, D. repleta, D. affinis, D. saltans,
D. sulphurigaster albostrigata and D. nasuta albomicans. Likewise, other
flies, including, sand flies, mayflies, blowflies, flesh flies, face flies,
houseflies, screw worm-flies, stable flies, mosquitos, northern cattle grub,
and the like will also exhibit vigilance properties.
Furthermore, insects other than flies can also exhibit behavioral and
molecular vigilance properties. For example, species of cockroach exhibit
rest rebound following rest deprivation, as well as a higher arousal
threshold correlated with rest (Tobler et al., Sleep Res. 1:231-239 (1992)).
Thus, the invention can also be practiced with insects such as cockroaches,
honeybees, wasps, termites, grasshoppers, moths, butterflies, fleas, lice,
boll weevils and beetles.
Arthropods other than insects also can exhibit behavioral and molecular
vigilance properties. For example, scorpions exhibit rest rebound following
rest deprivation, as well as a characteristic arousal threshold and heart
rate associated with rest (Tobler et al., J. Comp. Physiol. 163:227-235
(1988)). Thus, the invention can also be practiced using arthropods such as
scorpions, spiders, mites, crustaceans, centipedes and millipedes.
Due to the high degree of genetic similarity across invertebrate species,
invertebrates other than arthropods, such as flatworms, nematodes (e.g. C.
elegans), mollusks (e.g. Aplysia or Hermissenda), echinoderms and annelids
will exhibit behavioral and molecular properties correlated with vigilance
state, and can be used in the methods of the invention.
Those skilled in the art can determine, using the assays described herein,
whether a particular invertebrate exhibits behavioral or molecular
properties correlated with vigilance state and, therefore, would be
applicable for use in the methods of the invention. The choice of
invertebrate will also depend on additional factors, for example, such as
the availability of the animals, the normal activity levels of the animals,
the availability of molecular probes for vigilance-modulated genes, the
number of animals and compounds one intends to screen, the ease and cost of
maintaining the animals in a laboratory setting, the method of contacting
and type of compounds being tested, and the particular property being
evaluated. Those skilled in the art can evaluate these factors in
determining an appropriate invertebrate to use in the screening methods.
For example, if it is desired to evaluate molecular properties in the
methods of the invention, an invertebrate that is genetically
well-characterized, such that homologs of vigilance-modulate genes are known
or can be readily determined, may be preferred. Thus, appropriate
invertebrates in which to evaluate molecular properties of vigilance can
include, for example, Drosophila, and C. elegans. If it desired to evaluate
behavioral properties in the methods of the invention, an invertebrate that
exhibits one or more behavioral properties now known to be consistent with
sleep, such as fruit flies, cockroaches, honeybees, wasps, moths, mosquitos,
scorpions, may be preferred.
As disclosed herein, invertebrate sleep exhibits an age-dependence similar
to mammalian sleep. Therefore, it may be desirable to practice the methods
of the invention using invertebrates of different ages so as to identify
compounds that alter vigilance in the very young or very old. Such compounds
can be tailored for use in pediatric or geriatric patients.
As also disclosed herein, invertebrate sleep patterns differ between females
and males. Therefore, it may be desirable to practice the methods of the
invention using invertebrates of both genders separately to identify
compounds appropriate for use in females, males, or both females and males.
If desired, invertebrates that contain mutations of varying degrees of
severity in vigilance-altering genes can be used in the screening methods
described herein, and compounds identified that correct these defects. In
such screens, a vigilance property is evaluated in mutant invertebrates and
in normal invertebrates. A compound that alters the vigilance property in
the mutant invertebrate to a level or amount more similar to the property in
the normal animal can thus be identified. For example, a screen can be
conducted in a Drosophila that is mutant at the Dat locus or the Ddc locus,
both of which, as shown in Example IV, alter, in different directions, the
amount of sleep rebound exhibited by the animal following sleep deprivation.
Accordingly, a compound that alters homeostatic regulation of sleep can be
identified as a compound that restores more normal sleep rebound in a Dat or
a Ddc mutant animal. Animals mutant in other vigilance-modulated or
vigilance-altering genes can similarly be identified or generated, and used
to identify compounds that affect a particular function implicated in
vigilance (e.g. neurotransmitter synthesis or degradation), or a particular
property of vigilance, including a homeostatically regulated property of
vigilance.
The methods of the invention are practiced by contacting an invertebrate
with a candidate compound, and evaluating a vigilance property. Appropriate
invertebrates, candidate compounds and vigilance properties to evaluate for
various applications of the method have been described above. As used
herein, the term "contacting" refers to any method of administering a
candidate compound to an invertebrate such that the compound, or a
metabolite thereof, is introduced into the invertebrate in an effective
amount so as to act on its nervous system.
Exemplary methods of contacting an invertebrate with a candidate compound
include feeding the compound to the animal, topical administration of the
compound, administration by aerosol spray, immersion of the animal in a
solution containing the compound, and injection of the compound. An
appropriate method of contacting an invertebrate with a compound can be
determined by those skilled in the art and will depend, for example, on the
type and developmental stage of the invertebrate, whether the invertebrate
is sleeping or awake at the time of contacting, the number of animals being
assayed, and the chemical and biological properties of the compound (e.g.
solubility, digestibility, bioavailability, stability and toxicity). For
example, as shown in Example IV below, Drosophila melanogaster can be
contacted with stimulants or hypnotics by dissolving the drugs in fly food
and providing the food to the flies.
A "candidate compound" used to contact the invertebrate can be any molecule
that potentially alters vigilance. A candidate compound can be a naturally
occurring macromolecule, such as a peptide, nucleic acid, carbohydrate,
lipid, or any combination thereof, or a partially or completely synthetic
derivative, analog or mimetic of such a macromolecule. A candidate compound
can also be a small organic or inorganic molecule, either naturally
occurring, or prepared partly or completely by synthetic methods. If
desired, a candidate compound can be combined with, or dissolved in, an
agent that facilitates uptake of the compound by the invertebrate, such as
an organic solvent (e.g. DMSO, ethanol), aqueous solvent (e.g. water or a
buffer), or food.
A candidate compound can be tested at a single dose, or at a range of doses.
It is expected that the effects on properties correlated with vigilance will
be dose dependent, as demonstrated with caffeine and hydroxyzine in Example
III, below. Appropriate concentrations of candidate compound to test in the
methods of the invention can be determined by those skilled in the art, and
will depend on the chemical and biological properties of the compound and
the method of contacting. Exemplary concentration ranges to test include
from about 10 .mu.g/ml to about 500 mg/ml, such as from about 100 .mu.g/ml
to 250 mg/ml, including from about 1 mg/ml to 200 mg/ml.
The number of different compounds to screen in the methods of the invention
can be determined by those skilled in the art depending on the application
of the method. For example, a smaller number of candidate compounds would
generally be used if the type of compound that is likely to alter vigilance
is known or can be predicted, such as when derivatives of a lead compound
are being tested. However, when the type of compound that is likely to alter
vigilance is unknown, it is generally understood that the larger the number
of candidate compounds screened, the greater the likelihood of identifying a
compound that alters vigilance. Therefore, the methods of the invention can
employ screening individual compounds separately or populations of compounds
including small populations and large or diverse populations, to identify a
compound that alters vigilance.
The appropriate time and duration to administer the compound can be
determined by those skilled in the art depending on the application of the
method. For example, it may be desirable to administer a compound at the
beginning or end of the normal wake or sleep period, continuously throughout
a normal wake or sleep period, or prior to, during, or after sleep
deprivation, depending on the vigilance property being evaluated and the
desired effect of the compound. As exemplified in Example III, below,
compounds that either increase or decrease vigilance can be administered in
the last hour of the normal wake period, and their effect on activity during
the next sleep period or on latency to sleep can be readily observed.
Methods for producing libraries of candidate compounds to use in the methods
of the invention, including chemical or biological molecules such as simple
or complex organic molecules, metal-containing compounds, carbohydrates,
peptides, proteins, peptidomimetics, glycoproteins, lipoproteins, nucleic
acids, antibodies, and the like, are well known in the art. Libraries
containing large numbers of natural and synthetic compounds also can be
obtained from commercial sources.
Following contacting the invertebrate with the candidate compound, any of
the vigilance properties described above can be evaluated, and a
determination made as to whether the compound alters, such as increases or
decreases, the vigilance property compared to a baseline or established
value for the property in an untreated control. Such a compound will
similarly alter vigilance in mammals. However, it will be understood that
the efficacy and safety of the compound in laboratory mammals can be further
evaluated before administering the compound to humans or veterinary animals.
For example, the compound can be tested for its maximal efficacy and any
potential side-effects using several different invertebrates or laboratory
mammals, across a range of doses, in a range of formulations, and at various
times during the normal sleep and wake periods.
Additionally, a compound that alters vigilance can be tested for its effects
on one or more additional vigilance properties in order to determine its
most effective application in therapy. For example, it may be desirable to
determine whether a compound that increases vigilance does so without
significantly altering latency to sleep when the effect of the compound
wears off. Such a compound would be an improvement over many of the
currently known vigilance-enhancing drugs that cause a characteristic
"crash" afterwards. It may also be desirable to determine whether the
compound that alters vigilance does so without a compensatory sleep rebound
effect.
Therefore, once a compound is identified that alters a desirable vigilance
property, the methods of the invention can be used to determine other
vigilance characteristics of the compound. Such other characteristics can be
assessed either simultaneously with the initial screen, or alternatively
they can be assessed in or more separate screens to identify or characterize
other vigilance properties of the compound. For example, a vigilance
altering compound identified that promotes sleep can be further assessed to
determine whether that compound additionally reduces arousal threshold to
normal sleep levels, while preserving the ability of the animal to be
wakened normally, and with subsequent normal wake-like behaviors. Such a
compound would be an improvement over many of the currently available
sleep-inducing drugs, which may not promote truly restorative sleep or
normal function on awakening. Similarly, a vigilance altering compound
identified that promotes wakefulness can be further assessed, as described
above, to determine whether that compound additionally reduces the rate or
extent of the wake-sleep transition, or "crash," following the vigilance
enhancing effects of the compound.
The methods of the invention are therefore applicable for screening and
identifying compounds that exhibit preferred vigilance altering effects as
well as for identifying compounds that exhibit a combination of preferred
vigilance altering effects to yield optimal vigilance altering compounds.
Such optimal vigilance altering compounds can be identified which combine
preferred effects on vigilance levels together with maintaining some or all
hemostatic regulatory properties of vigilance.
As used herein, "homestatic regulatory properties of vigilance" or
"homeostatic regulatory properties" is intended to mean those vigilance
properties that are compensatory changes in vigilance resulting from, or
correlating with, the quantity or quality of vigilance from a previous time
period. Homeostatic regulatory properties are therefore vigilance properties
when viewed in light of the vigilance state of a previous period. Such
properties include, for example, vigilance properties such as sleep rebound,
wake period, latency to sleep, the rate of the sleep-wake transition,
alertness or drowsiness when there has been a corresponding and opposite
change in vigilance in the immediate, prior period, or when there has been a
correlative effect in the immediate, prior period.
For the specific homeostatic regulatory property referred to as sleep
rebound, prolonged or more intense sleep periods occur as a compensatory
change to prior increases in vigilance periods. For the remaining
homeostatic regulatory properties specifically exemplified above, such
properties are, for example, compensatory changes due to correlative effects
in the prior period. For example, the transition rate between wake and sleep
states will be correspondingly increased or decreased depending on the
amount and quality of the previous wake or sleep vigilance state. Similarly,
an animal will be more alert following a more restful period and will be
more drowsy following a less restful period. Such compensatory vigilance
states arise from the quality and nature of vigilance state of the previous
time period. Homeostatic regulatory properties of vigilance other than those
described above also exist and are well known to those skilled in the art.
Preferred or optimal vigilance altering compounds can be identified using
the methods of the invention which exhibit, for example, predetermined
effects on the magnitude of vigilance levels or on the period and duration
of the effect. For example, vigilance altering compounds can be identified
that either increase or decrease vigilance levels in small or large
increments or to a specified degree. Vigilance altering compounds similarly
can be identified that increase or decrease vigilance levels to a maximum
amount allowable without affecting other vital or relevant physiological
processes. Preferred or optimal compounds also can be selected that modulate
the duration of the vigilance altering effect for a predetermined period,
including maximal durations, without adversely affecting other vital or
relevant physiological processes.
Compounds exhibiting one or more combinations of the above effects can
similarly be identified using the methods of the invention. A specific
example of one such preferred or optimal combination is a compound that
alters vigilance, either by increasing or decreasing vigilance, to its
maximal extent, but for a short and specified time. Another example is a
compound that results in small alterations in vigilance levels but exhibits
a relatively prolonged, and predetermined duration of the effect. Vigilance
altering compounds exhibiting other combinations of preferred or optimal
vigilance effects can similarly be selected using the methods of the
invention, given the teachings and descriptions herein.
Additionally, preferred or optimal vigilance altering compounds can be
identified using the methods of the invention which modulate, for example,
one or more homeostatic regulatory properties of vigilance following a prior
perturbation in vigilance levels or periods. For example, vigilance altering
compounds can be identified that modulate the sleep rebound, wake period,
latency to sleep, the rate of the sleep-wake transition, alertness or
drowsiness. Vigilance altering compounds can be identified, for example,
that increase or decrease the period or amount of sleep rebound following
prolonged periods of increased vigilance. Similarly, vigilance altering
compounds can be identified, for example, that increase or decrease the
period or amount of wake period as well as the level of vigilance following
prolonged periods of sleep. Such compounds can be preferred because they
increase the animal's alertness and therefore decrease lethargic periods
during the wake state. Finally, vigilance altering compounds can be
identified that, for example, decrease the rate of the wake-to-sleep
transition so as to prevent a crash following prolonged waking periods as
well as increase the rate of the sleep-to-wake transitions so as to achieve
normal levels of vigilance following prolonged or induced periods of sleep.
Vigilance altering compounds exhibiting one or more combinations of the
above modulatory effects on homeostatic regulatory properties can similarly
be identified using the methods of the invention. One specific example is a
compound that prevents or reduces sleep rebound to a specified extent and
maintains normal vigilance levels following prolonged wake periods. Another
specific example is a compound that increases the rate of the sleep-to-wake
transition while also preventing lethargic periods during the wake state
following prolonged or induced sleep.
Likewise, the methods of the invention are also applicable to identifying
compounds that maintain or mimic, for example, one or more homeostatic
regulatory properties following a prior perturbation. For example, it can be
desirable to maintain or induce normal homeostatic regulatory properties
following prior preturbation of vigilance levels or periods. In such
instances, the methods of the invention can be used to identify compounds
that cause such effects following a prior modulation of vigilance.
Finally, preferred or optimal vigilance altering compounds can be identified
using the methods of the invention which exhibit combinations, including
optimal combinations, of one or more preferred vigilance altering effects
and modulation or maintenance of one or more homeostatic regulatory
properties of vigilance. For example, vigilance altering compounds can be
identified that induce specific magnitudes or durations of vigilance levels
and which alter homeostatic regulatory properties following the induced
changes in vigilance levels. One specific example, is a compound that
maximally increases vigilance levels over prolonged periods without a
subsequent sleep rebound effect. Alternatively, such a vigilance increasing
compound can also result in little or no crash following the prolonged wake
period. Another example is a compound that decreases vigilance, such as
induces restful sleep states, for a predetermined period without a lethargic
vigilance states following the sleep period. Similarly, vigilance altering
compounds can be identified that induce specific magnitudes or durations of
vigilance levels and which alter homeostatic regulatory properties
simultaneously with the induced changes in vigilance levels. Compounds
exhibiting various other combinations of vigilant altering effects and
modulation, or maintenance, of homeostatic regulatory properties can
similarly be identified using the method and teachings described herein.
Therefore, the invention allows the identification of compounds that alter
vigilance levels and modulate or maintain homeostatic regulatory properties
of vigilance. Such compounds can be identified in the initial screen, or
alternatively, such compounds can be identified step-wise by first
identifying compounds that alter vigilance and subsequently determining
whether such identified compounds affect homeostatic regulatory properties
of vigilance, such as sleep rebound and latency to sleep. Similarly,
compounds can be identified either in the initial screen or in step-wise
procedures that alter vigilance properties and are devoid of deleterious
side-effects, such as a precipitous crash after the drug wears off or lack
of restfulness following drug induced sleep. Therefore, the methods of the
invention are applicable for identifying compounds that alter vigilance in
mammals, as well as to identifying compounds that alter vigilance levels
with concomitant homeostatic regulatory properties. Similarly, the methods
of the invention are also applicable to identifying compounds that alter
vigilance in mammals that are devoid of deleterious and unwanted
side-effects.
Compounds identified by the methods of the invention as compounds that alter
vigilance can also have an effect on neuronal plasticity, or the ability to
learn and form memories. Learning is not possible during sleep in mammals,
whereas learning and memory are positively associated with the level of
vigilance during waking. Thus, by increasing vigilance, it is also possible
to increase learning and memory. Accordingly, in one embodiment, the
invertebrate is contacted with a candidate compound, a vigilance property is
evaluated, and learning or memory is also evaluated.
A variety of assays are known in the art that can be used to evaluate
learning and either short-term or long-term memory in invertebrates,
including habituation and sensitization assays, and conditioning assays.
Habituation refers to a decrease, and sensitization refers to an increase,
in a behavioral response on repeated presentation of the same stimulus, and
can be considered rudimentary forms of learning. Exemplary habituation
assays that can be readily adapted for use in a variety of invertebrates are
described, for example, for C. elegans in Rankin et al., Behav. Brain Res.
37:89-92 (1990); for Drosophila in Boynton et al., Genetics 131:655-672
(1992); and for Aplysia in Kandel et al., Cold Spring Harb. Symp. Quant.
Biol. 40:465-482 (1976).
Classical (Pavlovian) conditioning is an accepted behavioral paradigm for
learning and memory. In an exemplary conditioning assay, invertebrates can
be exposed to two different stimuli, such as two odorants or two colors of
light, one of which is associated with negative reinforcement, such as an
electric shock. The animals are then removed and tested in a new apparatus,
similar to the training arrangement but without reinforcement. Avoidance
behavior is scored as learning, and retention time of the learned behavior
is scored as memory. Exemplary conditioning assays that can be readily
adapted for use in a variety of invertebrates are described, for example,
for Drosophila in Quinn et al., Proc. Natl. Acad. Sci. USA 71:708-712
(1974); for cockroach in Mizunami et al., J. Comp. Neruol. 402:520-537
(1998); and for crab in Hoyle, Behav. Biol. 18:147-163 (1976).
Claim 1 of 2 Claims
1. A method of identifying a vigilance
enhancing compound that modulates homeostatic regulation, comprising: (a)
contacting an invertebrate with a candidate vigilance enhancing compound,
(b) determining the effect of said candidate compound on a homeostatic
regulatory property of vigilance selected from the group consisting of
sleep rebound, wake period, latency to sleep, rate of sleep wake
transition, alertness and drowsiness by comparing said effect to a
baseline or established value for the property in an untreated control,
wherein a compound that alters said homeostatic regulatory property is
characterized as being a vigilance enhancing compound that modulates
homeostatic regulation. ____________________________________________
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