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Title:
G-rich polynucleotides for the treatment of Huntington's Disease
United States Patent: 7,807,648
Issued: October 5, 2010
Inventors: Kmiec; Eric B.
(Landenberg, PA), Parekh-Olmedo; Hetal (Mickleton, NJ)
Assignee: University of
Delaware (Newark, DE)
Appl. No.: 11/544,278
Filed: October 6, 2006
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Outsourcing Guide
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Abstract
The present invention relates to
oligonucleotide compositions and therapeutic uses thereof to modify
protein-protein interactions. In particular, the invention relates to the
use of a guanidine-rich oligonucleotides to disrupt disease-causing
protein aggregates, for example, Huntington's Disease (HD) protein
aggregates.
Description of the
Invention
SUMMARY OF THE INVENTION
The present invention is based on the surprising and unexpected discovery
that certain oligonucleotides are capable of disrupting protein aggregates
that have been associated with disease pathologies. Therefore, the
oligonucleotides of the invention can be used as therapeutics in the
treatment and prevention of such diseases, and can also aid in the study
of the diseases and their underlying physiological origins. In particular,
the invention relates to guanosine-rich oligonucleotide compositions and
associated methods of use to inhibit protein aggregates and their
detrimental effects.
Although factors are known which lead to aggregation of proteins in the
native state, for example, salting out, and isoelectric precipitation; the
majority of cases of protein aggregation involve the intermolecular
association of a partially-folded or "unfolded" intermediate state of the
protein. The underlying reason is probably that partially-folded
intermediates have hydrophobic patches, which normally pack together to
yield the native state, but which can also interact in an intermolecular
manner to form an aggregate. Diseases where protein aggregation is causal
or an associated symptom and for which the present invention may be useful
for treatment and/or prevention include Down's syndrome, Alzheimer's
disease (AD), Parkinson's disease (PD), amyotrophic lateral sclerosis
(ALS), and prion diseases such as bovine spongiform encephalitis (BSE) and
Creutzfeldt-Jakob Disease (CJD), cystic fibrosis, and the so-celled
polyglutamine diseases (TABLE 1 (see Original Patent)), for example,
Huntington's disease (HD), dentato-rubral and pallido-luysian atrophy (DRPLA)
and several forms of spino-cerebellar ataxia (SCA), also have
intracellular inclusions in regions corresponding to the regions of
neuronal degeneration
In certain aspects the invention relates to isolated oligonucleotide
compositions comprising from about 15 to about 50 nucleotides, and having
at least 40% guanosine nucleotides. In certain embodiments the invention
comprises oligonucleotides of SEQ ID NOs: 1-7. These gunosine rich
oligonucleotides (GROs) have been shown to form higher order aggregates,
for example, G-quartet structures, in which the GROs align in a parallel
or antiparallel configuration. (See Biyani and Nisigaki, Gene 364: 130-38
(2005), incorporated herein by reference in its entirety). While not being
limited to any particular theory, the inventors hypothesize that the
higher-order structures of the GROs of the invention mediate their
efficacy; i.e., inhibiting the aggregation of proteins, for example, the
disease associated polyglutamine proteins. However, the GROs of the
present invention may also be used generally to inhibit aggregation of
other disease related proteins as indicated above. Therefore, in another
aspect the oligonucleotide of the invention comprises a G-quartet
structure. In a preferred embodiment, the isolated oligonucleotide of the
invention comprises from 18-24 nucleotides, and has at least 95% guanosine
nucleotides.
In other aspects the isolated GRO of the invention is disposed in a vector
or plasmid nucleic acid for its convenient cloning, amplification, and/or
transcription. In still other aspects the isolated GRO of the invention is
operably linked to one or more transcription regulatory nucleic acid
sequences. In yet another aspect, the isolated GRO is disposed in a vector
or plasmid nucleic acid, and is operably linked with one or more
transcription regulatory nucleic acid sequences.
In other aspects, the invention relates to a host cell comprising the
isolated GRO of the invention. In certain embodiments, the host cell
further comprises a vector or plasmid nucleic acid containing one or more
transcription regulatory nucleic acid sequences operably linked with the
GRO sequence of the invention. The vector or plasmid nucleic acids can be,
for example, suitable for eukaryotic or prokaryotic cloning,
amplification, or transcription. The vector or plasmid nucleic acids can
also be stably integrated into the host cell's genome or maintained
episomally.
In another aspect, the invention relates to method for inhibiting and/or
reducing the aggregation of proteins. In other aspects, the invention
relates to methods for inhibiting or reducing the aggregation of
polyglutamine proteins, such as those that cause Huntington's Disease, or
Spinocerebellar ataxia. In any embodiment of these aspects the invention
comprises contacting an protein capable of forming a protein aggregate or
a protein aggregate with an effective amount of a GRO of the invention to
result in the inhibition of protein aggregate formation, the reduction of
protein aggregation, and/or the dissociation of the components from a
protein aggregate.
In other aspects, the invention relates to methods for treating and/or
preventing a disease or condition in an individual related to the
detrimental effects of protein aggregation. In certain embodiments, the
methods of the invention comprise administering an effective amount of an
isolated GRO in a pharmaceutically acceptable form to an individual in
need thereof. In certain embodiments, the isolated GRO of the invention is
administered together with a pharmaceutically acceptable carrier,
excipient, adjuvant, amino acid, peptide, polypeptide, chemical compound,
drug, biologically active agent or a combination thereof. As such, in
another aspect the invention relates to therapeutic compositions
comprising the isolated GRO of the invention in a pharmaceutically
acceptable form together with at least one pharmaceutically acceptable
carrier, excipient, adjuvant, amino acid, peptide, polypeptide, chemical
compound, drug, biologically active agent or a combination thereof.
In certain embodiments the therapeutic GRO of the invention is complexed,
bound, or conjugated to one or more chemical moieties to improve and/or
modify, for example, bioavailability, half-life, efficacy, and/or
targeting. In certain aspects of this embodiment, the GRO may be complexed
or bound, either covalently or non-covalently with, for example, cationic
molecules, salts or ions, lipids, glycerides, carbohydrates, amino acids,
peptides, proteins, other chemical compounds, for example, phenolic
compounds, and combinations thereof. In certain aspects the invention
relates to a GRO of the invention conjugated to a polypeptide, for
example, an antibody. In certain embodiments the antibody is specific for
the protein or protein aggregate of interest and therefore targets the GRO
to the protein and/or protein aggregate.
The therapeutic GRO of the invention can be administered by any suitable
route recognized by those of skill in the art, for example, enteral,
intravenous, intra-arterial, parenteral, topical, transdermal, nasal, and
the like. In addition, the therapeutic may be in any pharmaceutically
acceptable form such as, for example, a liquid, lyophilized powder, gel,
pill, controlled release capsule, and the like, which is now known or
becomes known to those of skill in the art.
DETAILED DESCRIPTION OF THE INVENTION
The present invention is based on the surprising an unexpected discovery
that certain oligonucleotides are capable of inhibiting protein
aggregation. The invention includes oligonucleotide compositions useful
for research and therapeutic purposes.
In certain embodiments, the invention comprises an isolated polynucleotide
sequence, for example, the isolated aptameric GROs of SEQ ID NOs: 1-12. By
"isolated nucleic acid sequence" is meant a polynucleotide that is not
immediately contiguous with either of the coding sequences with which it
is immediately contiguous (one on the 5' end and one on the 3' end) in the
naturally occurring genome of the organism from which it is derived. The
term therefore includes, for example, a recombinant DNA which is
incorporated into a vector; into an automatically replicating plasmid or
virus; or into the genomic DNA of a prokaryote or eukaryote, or which
exists as a separate molecule (e.g., a cDNA) independent of other
sequences. The nucleotides can be modified forms of DNA or RNA.
The present invention relates to the finding that guanosine (G) rich
oligonucleotides (GROs) form functional aptamers, and are effective
inhibitors of protein aggregation, for example, the aggregation of
polyglutamine proteins such as huntingtin protein, which is associated
with Huntington's Disease (HD). As such, the isolated GROs of the
invention have therapeutic potential and can be used as a treatment for
patients with diseases and conditions resulting from detrimental effects
of protein aggregation, for example, Huntington's disease. While not being
limited by any particular theory, the inventors postulate that the
beneficial effect observed with the GROs of the invention may result from
the inhibition or slowing of the aggregation process. The GROs of the
invention that possess aptameric activity may also be beneficial in other
amyloid or neurodegenerative diseases, for example, Alzheimer's Disease,
Parkinson's Disease, spinocerebellar ataxia, and prion diseases. Moreover,
the GROs of the present invention can be used to examine the relationship
between cellular aggregates and toxicity in various model systems.
Therefore, in one embodiment the polynucleotide composition of the
invention comprises an isolated aptameric oligonucleotide having from
about 15 to about 50 nucleotides, and having at least 40% guanosine
nucleotides. In certain embodiments the invention comprises
oligonucleotides of SEQ ID NOs: 1-12. In another embodiment, the
oligonucleotides of the invention are capable of forming G-quartet
structures.
G-rich DNA and RNA have the ability to form inter- and intramolecular
four-stranded structures, referred to as G-quartets. (See Biyani and
Nisigaki, Gene 364: 130-38 (2005)). G-quartets arise from the association
of four G-bases into a cyclic Hoogsteen H-bonding parallel or
anti-parallel arrangement, and each G-base makes two hydrogen bonds with
its neighbor G-base (N1 to O6 and N2 to N7). G-quartets stack on top of
each other to give rise to tetrad-helical structures. The stability of
G-quartet structures depends on several factors: the presence of the
monovalent cations, the concentration of the G-rich oligonucleotides
present, and the sequence of the G-rich oligonucleotides under study.
Potassium with the optimal size to interact within a G-octamer greatly
promotes the formation of G-quartet structures and increases their
stability. G-quartet oligodeoxynucleotides (GQ-ODNs) have been suggested
to play a critical role in several biological processes including
modulation of telomere activity, inhibition of human thrombin, HIV
infection, HIV-1 integrase activity, human nuclear topoisomerase 1
activity, and DNA replication in vitro. On the basis of the structure and
mechanism of Stat3 activation, G-quartet-forming oligonucleotides were
developed recently to block Stat3 activity within cancer cells.
While there is no hard rule governing what specific nucleotide sequence
will result in the G-quartet structure, they can usually form with some
iteration of a guanosine repeat, for example, GGTT.sub.n. Thus, as along
as the guanosines can come in contact via parallel or anti paralell
positioning, then the oligonucleotides can form higher-order structures
such as the G-quartet structure. As such, the sequence of the aptameric
oligonucleotide of the invention can be varied in any number of ways as
long as the oligonucleotide comprises from about 15 to about 50
nucleotides, comprises at least 40% guanosine nucleotides. In a preferred
embodiment, the aptameric oligonucleotides form a G-quartet structure. In
certain embodiments, the invention comprises an aptameric oligonucleotide
of SEQ ID NOs:1-12.
While not being limited to any particular theory, the inventors
hypothesize that the higher-order structures of the aptameric GROs of the
invention mediate their efficacy; i.e., inhibiting the aggregation of
proteins, for example, the disease associated polyglutamine proteins.
However, the aptameric GROs of the present invention may also be used
generally to inhibit aggregation of other disease related proteins as
indicated above. In a preferred embodiment, the isolated aptameric
oligonucleotide of the invention comprises from 18-24 nucleotides, and has
at least 95% guanosine nucleotides. In a particularly preferred
embodiment, the invention comprises the GRO of SEQ ID NO:3. By utilizing a
biochemical assay as an initial screen, SEQ ID NO:3 inhibited Htt
aggregation. The monotonic G-ODN of the invention was also able to improve
cell survival in PC12 cells overexpressing a mutant Htt fragment fusion
gene.
In any of the embodiments described herein, the aptameric GRO of the
invention may comprise one or more modified nucleotides or nucleotide
analogs. Nucleotide modifications can be incorporated during or after
oligonucleotide synthesis, and include modifications of the nucleobase,
the sugar moiety, and/or the phosphate group.
Phosphodiester Moiety Analogs. Numerous analogs to the naturally occurring
phosphodiester backbone have been used in oligonucleotide design.
Phosphorothioate, phosphorodithioate, and methylphosphonate are readily
synthesized using known chemical methods. Because novel nucleotide
linkages can be synthesized manually to form a dimer and the dimer later
introduced into the oligonucleotide via automated synthesis, the range of
potential backbone modifications is as broad as the scope of synthetic
chemistry. For example, the oligonucleotide may be substituted or modified
in its internucleotide phosphate residue with a thioether, carbamate,
carbonate, acetamidate or carboxymethyl ester.
Unlike the naturally occurring phosphodiester moieties, many
phosphodiester analogs have chiral centers. For example, phosphorothioates,
methylphosphonates, phosphoramidates, and alkyl phosphotriesters all have
chiral centers. One skilled in the art would recognize numerous other
phosphodiester analogs that possess chiral centers. Because of the
importance of stereochemistry in hybridization, the stereochemistry of
phosphodiester analogs can influence the affinity of the oligonucleotide
for its target.
Most phosphodiester backbone analogs exhibit increased resistance to
nuclease degradation. In an embodiment, phosphorothioates, methyl
phosphonates, phosphorimidates, and/or phosphotriesters are used to
achieve enhanced nuclease resistance. Increased resistance to degradation
may also be achieved by capping the 5' and/or 3' end of the
oligonucleotide. In an embodiment, the 5' and/or 3' end capping of the
oligonucleotide is via a 5'-5' and/or 3'-3' terminal inverted linkage.
Phosphorothioate oligodeoxynucleotides are relatively nuclease resistant,
water soluble analogs of phosphodiester oligodeoxynucleotides. These
molecules are racemic, but still hybridize well to their RNA targets.
Stein, C., et al. (1991) Pharmac. Ther. 52:365 384. Phosphorothioate
oligonucleotides may be stereo regular, stereo non-regular or stereo
random. A stereo regular phosphorothioate oligonucleotide is a
phosphorothioate oligonucleotide in which all of the phosphodiester
linkages or phosphorothiodiester linkages polarize light in the same
direction. Each phosphorous in each linkage may be either an S.sub.p or
R.sub.p diastereomer.
Sugar Moiety Analogs. Oligonucleotide analogs may be created by modifying
and/or replacing a sugar moiety. The sugar moiety of the oligonucleotide
may be modified by the addition of one or more substituents. For example,
one or more of the sugar moieties may contain one or more of the following
substituents: amino-alkylamino, araalkyl, heteroalkyl, heterocycloalkyl,
aminoalkylamino, O, H, an alkyl, polyalkylamino, substituted silyl, F, Cl,
Br, CN, CF.sub.3, OCF.sub.3, OCN, O-alkyl, S-alkyl, SOMe, SO.sub.2Me,
ONO.sub.2, NH-alkyl, OCH.sub.2CH.dbd.CH.sub.2, OCH.sub.2CCH, OCCHO, allyl,
O-allyl, NO.sub.2, N.sub.3, and NH.sub.2.
Modification of the 2' position of the ribose sugar has been shown in many
instances to increase the oligonucleotide's resistance to degradation. For
example, the 2' position of the sugar may be modified to contain one of
the following groups: H, OH, OCN, O-alkyl, F, CN, CF.sub.3, allyl, O-allyl,
OCF.sub.3, S-alkyl, SOMe, SO.sub.2Me, ONO.sub.2, NO.sub.2, N.sub.3,
NH.sub.2, NH-alkyl, or OCH.dbd.CH.sub.2, OCCH, wherein the alkyl may be
straight, branched, saturated, or unsaturated.
In addition, the oligonucleotide may have one or more of its sugars
modified and/or replaced so as to be a ribose or hexose (i.e. glucose,
galactose). Further, the oligonucleotide may have one or more modified
sugars. The sugar may be modified to contain one or more linkers for
attachment to other chemicals such as fluorescent labels. In an
embodiment, the sugar is linked to one or more aminoalkyloxy linkers. In
another embodiment, the sugar contains one or more alkylamino linkers.
Aminoalkyloxy and alkylamino linkers may be attached to biotin, cholic
acid, fluorescein, or other chemical moieties through their amino group.
Base Moiety Analogs. In addition, the oligonucleotide may have one or more
of its nucleotide bases substituted or modified. In addition to adenine,
guanine, cytosine, thymine, and uracil, other bases such as inosine,
deoxyinosine, hypoxanthine may be used. In addition, isoteric purine
2'deoxy-furanoside analogs, 2'-deoxynebularine or 2'deoxyxanthosine, or
other purine or pyrimidine analogs may also be used. By carefully
selecting the bases and base analogs, one may fine tune the binding
properties of the oligonucleotide. For example, inosine nay be used to
reduce hybridization specificity, while diaminopurines may be used to
increase hybridization specificity.
Adenine and guanine may be modified at positions N3, N7, N9, C2, C4, C5,
C6, or C8 and still maintain their hydrogen bonding abilities. Cytosine,
thymine and uracil may be modified at positions N1, C2, C4, C5, or C6 and
still maintain their hydrogen bonding abilities.
Some base analogs have different hydrogen bonding attributes than the
naturally occurring bases. For example, 2-amino-2'-dA forms three, instead
of the usual two, hydrogen bonds to thymine (T). Examples of base analogs
that have been shown to increase duplex stability include, but are not
limited to, 5-fluoro-2'-dU, 5-bromo-2'-dU, 5-methyl-2'-dc,
5-propynyl-2'-dC, 5-propynyl-2'-dU, 2-amino-2'-dA, 7-deazaguanosine,
7-deazadenosine, and N2-Imidazoylpropyl-2'-dG.
Pendant Groups. A "pendant group" may be linked to the oligonucleotide.
Pendant groups serve a variety of purposes which include, but are not
limited to, increasing cellular uptake of the oligonucleotide, enhancing
degradation of the target nucleic acid, and increasing hybridization
affinity. Pendant groups can be linked to any portion of the
oligonucleotide but are commonly linked to the end(s) of the
oligonucleotide chain. Examples of pendant groups include, but are not
limited to: acridine derivatives (i.e.
2-methoxy-6-chloro-9-aminoacridine); cross-linkers such as psoralen
derivatives, azidophenacyl, proflavin, and azidoproflavin; artificial
endonucleases; metal complexes such as EDTA-Fe(II), o-phenanthroline-Cu(I),
and porphyrin-Fe(II); alkylating moieties; nucleases such as
amino-1-hexanolstaphylococcal nuclease and alkaline phosphatase; terminal
transferases; abzymes; cholesteryl moieties; lipophilic carriers; peptide
conjugates; long chain alcohols; phosphate esters; amino; mercapto groups;
phenolic groups, radioactive markers; nonradioactive markers such as dyes;
and polylysine or other polyamines.
In one embodiment, the aptameric oligonucleotide of the invention contains
at least one nucleotide conjugated to a carbohydrate, sulfated
carbohydrate, or gylcan. Conjugates may be regarded as a way as to
introduce a specificity into otherwise unspecific DNA binding molecules by
covalently linking them to a selective oligonucleotide or polypeptide.
Cellular Uptake. To enhance cellular uptake, the oligonucleotide may be
administered in combination with a carrier or lipid. For example, the
oligonucleotide may be administered in combination with a cationic lipid.
Examples of cationic lipids include, but are not limited to, lipofectin,
dotma, dope, DMRIE and DPPES. The oligonucleotide may also be administered
in combination with a cationic amine such as poly (L-lysine).
Oligonucleotide uptake may also be increased by conjugating the
oligonucleotide to chemical moieties such as transferrin and cholesteryls.
In addition, oligonucleotides may be targeted to certain organelles by
linking specific chemical groups to the oligonucleotide. For example,
linking the oligonucleotide to a suitable array of mannose residues will
target the oligonucleotide to the liver.
The cellular uptake and localization of oligonucleotides may be monitored
by using labeled oligonucleotides. Methods of labeling include, but are
not limited to, radioactive and fluorescent labeling. Fluorescently
labeled oligonucleotides may be monitored using fluorescence microscopy
and flow cytometry.
The efficient cellular uptake of oligonucleotides is well established. For
example, when a 20 base sequence phosphorothioate (PS) oligonucleotide was
Injected into the abdomens of mice, either intraperitoneally (IP) or
intravenously (IV). The oligonucleotide accumulated in the kidney liver,
and brain. Chain-extended oligonucleotides were also observed. Argrawal,
S., et al. (1988) Proc. Natl. Acad. Sci. U.S.A. 85:7079 7083. When the PS
27-oligonucleotide was given by IV to rats, the initial T.sub.1/2 (transit
out of the plasma) was 23 min, while the T.sub.1/2beta of total body
clearance was 33.9 hours. The long beta half-life of elimination
demonstrates that dosing could be infrequent and still maintain effective,
therapeutic tissue concentrations. Iverson, P. (1991) Anti-Cancer Drug
Des. 6:531.
Another aspect of the invention pertains to vectors, containing an
aptameric GRO of the invention, for example, nucleic acid encoding SEQ ID
NOs: 1-12, or derivatives thereof for its convenient cloning,
amplification, and/or transcription. As used herein, the term "vector"
refers to a nucleic acid molecule capable of transporting another nucleic
acid to which it has been "operably linked." One type of vector is a
"plasmid", which refers to a circular double stranded DNA loop into which
additional DNA segments can be ligated. Another type of vector is a viral
vector, wherein additional DNA segments can be ligated into the viral
genome. Certain vectors are capable of autonomous replication in a host
cell into which they are introduced (e.g., bacterial vectors having a
bacterial origin of replication and episomal mammalian vectors). Other
vectors (e.g., non-episomal mammalian vectors) are integrated into the
genome of a host cell upon introduction into the host cell, and thereby
are replicated along with the host genome. Moreover, certain vectors are
capable of directing the transcription of sequences to which they are
operatively-linked. Such vectors are referred to herein as "expression
vectors". In general, expression vectors of utility in recombinant DNA
techniques are often in the form of plasmids. In the present
specification, "plasmid" and "vector" can be used interchangeably as the
plasmid is the most commonly used form of vector. However, the invention
is intended to include such other forms of expression vectors, such as
viral vectors (e.g., replication defective retroviruses, adenoviruses and
adeno-associated viruses), and artificial chromosomes, which serve
equivalent functions.
The recombinant expression vectors of the invention comprise a nucleic
acid of the invention in a form suitable for expression of the nucleic
acid in a host cell, which means that the recombinant expression vectors
include one or more regulatory sequences, selected on the basis of the
host cells to be used for expression, that is operatively-linked to the
nucleic acid sequence to be transcribed. Within a recombinant expression
vector, "operably-linked" is intended to mean that the nucleotide sequence
of interest is linked to the regulatory sequence(s) in a manner that
allows for transcription and/or expression of the nucleotide sequence
(e.g., in an in vitro transcription/translation system or in a host cell
when the vector is introduced into the host cell).
The term "regulatory sequence" is intended to include promoters, enhancers
and other expression control elements (e.g., polyadenylation signals).
Such regulatory sequences are described, for example, in Goeddel, GENE
EXPRESSION TECHNOLOGY: METHODS IN ENZYMOLOGY 185, Academic Press, San
Diego, Calif. (1990). Regulatory sequences include those that direct
constitutive expression of a nucleotide sequence in many types of host
cell and those that direct expression of the nucleotide sequence only in
certain host cells (e.g., tissue-specific regulatory sequences). It will
be appreciated by those skilled in the art that the design of the
expression vector can depend on such factors as the choice of the host
cell to be transformed, the level of transcription, and/or expression of
protein desired, etc. The expression vectors of the invention can be
introduced into host cells to thereby produce proteins or peptides,
including fusion proteins or peptides, encoded by nucleic acids as
described herein. The recombinant expression vectors of the invention can
be designed for transcription and/or expression in prokaryotic or
eukaryotic cells. For example, transcription and/or expression in
bacterial cells such as Escherichia coli, insect cells (using baculovirus
expression vectors) yeast cells or mammalian cells. Suitable host cells
are discussed further in Goeddel, GENE EXPRESSION TECHNOLOGY: METHODS IN
ENZYMOLOGY 185, Academic Press, San Diego, Calif. (1990). Alternatively,
the recombinant expression vector can be transcribed and/or translated in
vitro, for example using T7 promoter regulatory sequences and T7
polymerase.
In another embodiment, the recombinant vector is capable of directing
transcription of the aptameric GRO preferentially in a particular cell
type (e.g., tissue-specific regulatory elements are used to express the
nucleic acid). Tissue-specific regulatory elements are known in the art.
Non-limiting examples of suitable tissue-specific promoters include the
albumin promoter (liver-specific; Pinkert, et al., 1987. Genes Dev. 1:
268-277), lymphoid-specific promoters (Calame and Eaton, 1988. Adv.
Immunol. 43: 235-275), in particular promoters of T cell receptors (Winoto
and Baltimore, 1989. EMBO J. 8: 729-733) and immunoglobulins (Banedji, et
al., 1983. Cell 33: 729-740; Queen and Baltimore, 1983. Cell 33: 741-748),
neuron-specific promoters (e.g., the neurofilament promoter; Byrne and
Ruddle, 1989. Proc. Natl. Acad. Sci. USA 86: 5473-5477), pancreas-specific
promoters (Edlund, et al., 1985. Science 230: 912-916), and mammary
gland-specific promoters (e.g., milk whey promoter; U.S. Pat. No.
4,873,316 and European Application Publication No. 264,166).
Developmentally-regulated promoters are also encompassed, e.g., the murine
hox promoters (Kessel and Gruss, 1990. Science 249: 374-379) and the
alpha-fetoprotein promoter (Campes and Tilghman, 1989. Genes Dev. 3:
537-546).
In other aspects, the invention relates to a host cell comprising the
isolated aptameric GRO of the invention. In certain embodiments, the host
cell comprises a vector, plasmid or artificial chromosome nucleic acid
containing one or more transcription regulatory nucleic acid sequences
operably linked with the aptameric GRO sequence of the invention. The
vector or plasmid nucleic acids can be, for example, suitable for
eukaryotic or prokaryotic cloning, amplification, or transcription. In
other embodiments, the invention comprises a plurality of aptameric GRO
sequences linked contiguously as a single polynucleotide chain. In still
other embodiments, the invention comprises a nucleic acid vector
containing a plurality of aptameric GRO sequences linked contiguously and
operably linked with the nucleic acid sequence of the vector.
The term "host cell" includes a cell that might be used to carry a
heterologous nucleic acid, or expresses a peptide or protein encoded by a
heterologous nucleic acid. A host cell can contain genes that are not
found within the native (non-recombinant) form of the cell, genes found in
the native form of the cell where the genes are modified and re-introduced
into the cell by artificial means, or a nucleic acid endogenous to the
cell that has been artificially modified without removing the nucleic acid
from the cell. A host cell may be eukaryotic or prokaryotic. For example,
bacteria cells may be used to carry or clone nucleic acid sequences or
express polypeptides. General growth conditions necessary for the culture
of bacteria can be found in texts such as BERGEY'S MANUAL OF SYSTEMATIC
BACTERIOLOGY, Vol. 1, N. R. Krieg, ed., Williams and Wilkins,
Baltimore/London (1984). A "host cell" can also be one in which the
endogenous genes or promoters or both have been modified to produce the
aptameric GRO of the invention.
In another aspect, the invention relates to method for inhibiting and/or
reducing the aggregation of proteins. In other aspects, the invention
relates to methods for inhibiting or reducing the aggregation of
polyglutamine proteins, such as those that cause Huntington's Disease, or
Spinocerebellar ataxia. In any embodiment of these aspects the invention
comprises contacting an protein capable of forming a protein aggregate or
a protein aggregate with an effective amount of a GRO of the invention to
result in the inhibition of protein aggregate formation, the reduction of
protein aggregation, and/or the dissociation of the components from a
protein aggregate.
Plasmids disclosed herein are either commercially available, publicly
available on an unrestricted basis, or can be constructed from available
plasmids by routine application of well-known, published procedures. Many
plasmids and other cloning and expression vectors are well known and
readily available, or those of ordinary skill in the art may readily
construct any number of other plasmids suitable for use. These vectors may
be transformed into a suitable host cell to form a host cell vector
system. Suitable hosts include microbes such as bacteria, yeast, insect or
mammalian organisms or cell lines. Examples of suitable bacteria are E.
coli and B. subtilis. A preferred yeast vector is pRS426-Gal. Examples of
suitable yeast are Saccharomyces and Pichia. Suitable amphibian cells are
Xenopus cells. Suitable vectors for insect cell lines include baculovirus
vectors. Mouse, rat or human cells are preferred mammalian cells.
Transformation of a host cell with recombinant DNA may be carried out by
conventional techniques as are well known to those skilled in the art. By
"transformation" is meant a permanent or transient genetic change induced
in a cell following incorporation of new DNA (i.e., DNA exogenous to the
cell). Where the cell is a mammalian cell, a permanent genetic change is
generally achieved by introduction of the DNA into the genome of the cell.
By "transformed cell" or "host cell" is meant a cell (e.g., prokaryotic or
eukaryotic) into which (or into an ancestor of which) has been introduced,
by means of recombinant DNA techniques, a DNA molecule encoding a
polypeptide of the invention (i.e., an INDY polypeptide), or fragment
thereof.
Where the host is prokaryotic, such as E. coli, competent cells which are
capable of DNA uptake can be prepared from cells harvested after
exponential growth phase and subsequently treated by the CaCl.sub.2 method
by procedures well known in the art. Alternatively, MgCl.sub.2 or RbCl can
be used. Transformation can also be performed after forming a protoplast
of the host cell or by electroporation.
When the host is a eukaryote, such methods of transfection with DNA
include calcium phosphate co-precipitates, conventional mechanical
procedures such as microinjection, electroporation, insertion of a plasmid
encased in liposomes, or virus vectors, as well as others known in the
art, may be used. Another method is to use a eukaryotic viral vector, such
as simian virus 40 (SV40) or bovine papilloma virus, to transiently infect
or transform eukaryotic cells. (Eukaryotic Viral Vectors, Cold Spring
Harbor Laboratory, Gluzman ed., 1982). Preferably, a eukaryotic host is
utilized as the host cell as described herein. The eukaryotic cell may be
a yeast cell (e.g., Saccharomyces cerevisiae) or may be a mammalian cell,
including a human cell.
Mammalian cell systems that utilize recombinant viruses or viral elements
to direct expression may be engineered. For example, when using adenovirus
expression vectors, the nucleic acid sequences may be ligated to an
adenovirus transcription/translation control complex, e.g., the late
promoter and tripartite leader sequence. This chimeric gene may then be
inserted in the adenovirus genome by in vitro or in vivo recombination.
Insertion in a non-essential region of the viral genome (e.g., region E1
or E3) will result in a recombinant virus that is viable and capable of
expressing the polypeptides in infected hosts (e.g., Logan & Shenk, Proc.
Natl. Acad. Sci. U.S.A. 81:3655-3659, 1984).
For long-term, high-yield production of recombinant genes, stable
expression is preferred. Rather than using expression vectors that contain
viral origins of replication, host cells can be transformed with the cDNA
encoding an aptameric GRO controlled by appropriate expression control
elements (e.g., promoter, enhancer, sequences, transcription terminators,
polyadenylation sites, etc.), and a selectable marker. The selectable
marker in the recombinant plasmid confers resistance to the selection and
allows cells to stably integrate the plasmid into their chromosomes and
grow to form foci, which in turn can be cloned and expanded into cell
lines. For example, following the introduction of foreign DNA, engineered
cells may be allowed to grow for 1 to 2 days in an enriched media, and
then are switched to a selective media. A number of selection systems may
be used, including but not limited to the herpes simplex virus thymidine
kinase (Wigler et al., Cell 11: 233, 1977), hypoxanthine-guanine
phosphoribosyltransferase (Szybalska & Szybalski, Proc. Natl. Sci. U.S.A.
48: 2026, 1962), and adenine phosphoribosyltransferase (Lowy et al., Cell
22: 817, 1980) genes can be employed.
In other aspects, the invention relates to methods for treating and/or
preventing a disease or condition in an individual related to the
detrimental effects of protein aggregation. In certain embodiments, the
methods of the invention comprise administering an effective amount of an
isolated GRO in a pharmaceutically acceptable form to an individual in
need thereof. In certain embodiments, the isolated GRO of the invention is
administered together with a pharmaceutically acceptable carrier,
excipient, adjuvant, amino acid, peptide, polypeptide, chemical compound,
drug, biologically active agent or a combination thereof. As such, in
another aspect the invention relates to therapeutic compositions
comprising the isolated GRO of the invention in a pharmaceutically
acceptable form together with at least one pharmaceutically acceptable
carrier, excipient, adjuvant, amino acid, peptide, polypeptide, chemical
compound, drug, biologically active agent or a combination thereof.
In certain embodiments the therapeutic GRO of the invention is complexed,
bound, or conjugated to one or more chemical moieties to improve and/or
modify, for example, bioavailability, half-life, efficacy, and/or
targeting. In certain aspects of this embodiment, the GRO may be complexed
or bound, either covalently or non-covalently with, for example, cationic
molecules, salts or ions, lipids, glycerides, carbohydrates, amino acids,
peptides, proteins, other chemical compounds, for example, phenolic
compounds, and combinations thereof. In certain aspects the invention
relates to a GRO of the invention conjugated to a polypeptide, for
example, an antibody. In certain embodiments the antibody is specific for
the protein or protein aggregate of interest and therefore targets the GRO
to the protein and/or protein aggregate.
The efficacy of oligonucleotide therapy is also well established. For
example, when a 24-base sequence PS oligonucleotide targeted to human c-myb
mRNA was infused, through a miniosmotic pump, into scid mice bearing the
human K562 chronic myeloid leukemia cell line, mean survival times of the
mice treated with the antisense oligonucleotides were six- to eightfold
longer than those of mice untreated or treated with the sense controls or
treated with an oligonucleotide complementary to the c-kit proto-oncogene
mRNA. Ratajczak, et al. (1992) Proc. Natl. Acad. Sci. U.S.A. 89:11823.
Therapeutic uses and formulations. The nucleic acids and proteins of the
invention are useful in potential prophylactic and therapeutic
applications implicated in a variety of disorders including, but not
limited to: metabolic disorders, diabetes, obesity, infectious disease,
anorexia, cancer, neurodegenerative disorders, Huntington's Disease,
Alzheimer's Disease, Parkinson's Disorder, prion diseases (e.g., BSE and
CJD), spinocerebellar ataxia, immune disorders, hematopoietic disorders,
and the various dyslipidemias, metabolic disturbances associated with
obesity, the metabolic syndrome X and wasting disorders associated with
chronic diseases and various cancers, cardiomyopathy, atherosclerosis,
hypertension, congenital heart defects, aortic stenosis, atrial septal
defect (ASD), atrioventricular (A-V) canal defect, ductus arteriosus,
pulmonary stenosis, subaortic stenosis, ventricular septal defect (VSD),
valve diseases, tuberous sclerosis, scleroderma, lupus erythematosus,
obesity, transplantation, adrenoleukodystrophy, congenital adrenal
hyperplasia, prostate cancer, neoplasm; adenocarcinoma, lymphoma, uterus
cancer, fertility, leukemia, hemophilia, hypercoagulation, idiopathic
thrombocytopenic purpura, immunodeficiencies, graft versus host disease,
AIDS, bronchial asthma, rheumatoid and osteoarthritis, Crohn's disease;
multiple sclerosis, treatment of Albright Hereditary Ostoeodystrophy, and
other diseases, disorders and conditions of the like.
Preparations for administration of the therapeutic complex of the
invention include sterile aqueous or non-aqueous solutions, suspensions,
and emulsions. Examples of non-aqueous solvents are propylene glycol,
polyethylene glycol, vegetable oils such as olive oil, and injectable
organic esters such as ethyl oleate. Aqueous carriers include water,
alcoholic/aqueous solutions, emulsions or suspensions, including saline
and buffered media. Vehicles include sodium chloride solution, Ringer's
dextrose, dextrose and sodium chloride, lactated Ringer's intravenous
vehicles including fluid and nutrient replenishers, electrolyte
replenishers, and the like. Preservatives and other additives may be added
such as, for example, antimicrobial agents, anti-oxidants, chelating
agents and inert gases and the like.
The nucleic acid molecules, polypeptides, and antibodies (also referred to
herein as "active compounds") of the invention, and derivatives,
fragments, analogs and homologs thereof, can be incorporated into
pharmaceutical compositions suitable for administration. Such compositions
typically comprise the nucleic acid molecule, protein, or antibody and a
pharmaceutically acceptable carrier. As used herein, "pharmaceutically
acceptable carrier" is intended to include any and all solvents,
dispersion media, coatings, antibacterial and antifungal agents, isotonic
and absorption delaying agents, and the like, compatible with
pharmaceutical administration. Suitable carriers are described in the most
recent edition of Remington's Pharmaceutical Sciences, a standard
reference text in the field, which is incorporated herein by reference.
Preferred examples of such carriers or diluents include, but are not
limited to, water, saline, finger's solutions, dextrose solution, and 5%
human serum albumin. Liposomes and non-aqueous vehicles such as fixed oils
may also be used. The use of such media and agents for pharmaceutically
active substances is well known in the art. Except insofar as any
conventional media or agent is incompatible with the active compound, use
thereof in the compositions is contemplated. Supplementary active
compounds can also be incorporated into the compositions.
A pharmaceutical composition of the invention is formulated to be
compatible with its intended route of administration. Examples of routes
of administration include parenteral, e.g., intravenous, intradermal,
subcutaneous, oral (e.g., inhalation), transdermal (i.e., topical),
transmucosal, intraperitoneal, and rectal administration. Solutions or
suspensions used for parenteral, intradermal, or subcutaneous application
can include the following components: a sterile diluent such as water for
injection, saline solution, fixed oils, polyethylene glycols, glycerine,
propylene glycol or other synthetic solvents; antibacterial agents such as
benzyl alcohol or methyl parabens; antioxidants such as ascorbic acid or
sodium bisulfite; chelating agents such as ethylenediaminetetraacetic acid
(EDTA); buffers such as acetates, citrates or phosphates, and agents for
the adjustment of tonicity such as sodium chloride or dextrose. The pH can
be adjusted with acids or bases, such as hydrochloric acid or sodium
hydroxide. The parenteral preparation can be enclosed in ampoules,
disposable syringes or multiple dose vials made of glass or plastic.
Pharmaceutical compositions suitable for injectable use include sterile
aqueous solutions (where water soluble) or dispersions and sterile powders
for the extemporaneous preparation of sterile injectable solutions or
dispersion. For intravenous administration, suitable carriers include
physiological saline, bacteriostatic water, Cremophor.TM.. (BASF,
Parsippany, N.J.) or phosphate buffered saline (PBS). In all cases, the
composition must be sterile and should be fluid to the extent that easy
syringeability exists. It must be stable under the conditions of
manufacture and storage and must be preserved against the contaminating
action of microorganisms such as bacteria and fungi. The carrier can be a
solvent or dispersion medium containing, for example, water, ethanol,
polyol (for example, glycerol, propylene glycol, and liquid polyethylene
glycol, and the like), and suitable mixtures thereof The proper fluidity
can be maintained, for example, by the use of a coating such as lecithin,
by the maintenance of the required particle size in the case of dispersion
and by the use of surfactants. Prevention of the action of microorganisms
can be achieved by various antibacterial and antifungal agents, for
example, parabens, chlorobutanol, phenol, ascorbic acid, thimerosal, and
the like. In many cases, it will be preferable to include isotonic agents,
for example, sugars, polyalcohols such as manitol, sorbitol, sodium
chloride in the composition. Prolonged absorption of the injectable
compositions can be brought about by including in the composition an agent
which delays absorption, for example, aluminum monostearate and gelatin.
Sterile injectable solutions can be prepared by incorporating the active
compound (e.g., the therapeutic complex of the invention) in the required
amount in an appropriate solvent with one or a combination of ingredients
enumerated above, as required, followed by filtered sterilization.
Generally, dispersions are prepared by incorporating the active compound
into a sterile vehicle that contains a basic dispersion medium and the
required other ingredients from those enumerated above. In the case of
sterile powders for the preparation of sterile injectable solutions,
methods of preparation are vacuum drying and freeze-drying that yields a
powder of the active ingredient plus any additional desired ingredient
from a previously sterile-filtered solution thereof.
Oral compositions generally include an inert diluent or an edible carrier.
They can be enclosed in gelatin capsules or compressed into tablets. For
the purpose of oral therapeutic administration, the active compound can be
incorporated with excipients and used in the form of tablets, troches, or
capsules. Oral compositions can also be prepared using a fluid carrier for
use as a mouthwash, wherein the compound in the fluid carrier is applied
orally and swished and expectorated or swallowed. Pharmaceutically
compatible binding agents, and/or adjuvant materials can be included as
part of the composition. The tablets, pills, capsules, troches and the
like can contain any of the following ingredients, or compounds of a
similar nature: a binder such as microcrystalline cellulose, gum
tragacanth or gelatin; an excipient such as starch or lactose, a
disintegrating agent such as alginic acid, Primogel, or corn starch; a
lubricant such as magnesium stearate or Sterotes; a glidant such as
colloidal silicon dioxide; a sweetening agent such as sucrose or
saccharin; or a flavoring agent such as peppermint, methyl salicylate, or
orange flavoring.
For oral administration, the pharmaceutical compositions may take the form
of, for example, tablets or capsules prepared by conventional means with
pharmaceutically acceptable excipients such as binding agents (e.g.,
pregelatinised maize starch, polyvinylpyrrolidone or hydroxypropyl
methylcellulose); fillers (e.g., lactose, microcrystalline cellulose or
calcium hydrogen phosphate); lubricants (e.g., magnesium stearate, talc or
silica); disintegrants (e.g., potato starch or sodium starch glycolate);
or wetting agents (e.g., sodium lauryl sulphate). The tablets may be
coated by methods well known in the art. Liquid preparations for oral
administration may take the form of, for example, solutions, syrups, or
suspensions, or they may be presented as a dry product for constitution
with water or other suitable vehicle before use. Such liquid preparations
may be prepared by conventional means with pharmaceutically acceptable
additives such as suspending agents (e.g., sorbitol syrup, cellulose
derivatives or hydrogenated edible fats); emulsifying agents (e.g.,
lecithin or acacia); non-aqueous vehicles (e.g., almond oil, oily esters,
ethyl alcohol or fractionated vegetable oils); and preservatives (e.g.,
methyl or propyl-p-hydroxybenzoates or sorbic acid). The preparations may
also contain buffer salts, flavoring, coloring, and sweetening agents as
appropriate.
Preparations for oral administration may be suitably formulated to give
controlled release of the active compound. For buccal administration the
compositions may take the form of tablets or lozenges formulated in
conventional manner. For administration by inhalation, the compounds for
use according to the present invention are conveniently delivered in the
form of an aerosol spray presentation from pressurized packs or a
nebulizer, with the use of a suitable propellant, e.g.,
dichlorodifluoromethane, trichlorofluoromethane, dichlorotetrafluoroethane,
carbon dioxide or other suitable gas. In the case of a pressurized aerosol
the dosage unit may be determined by providing a valve to deliver a
metered amount. Capsules and cartridges of e.g. gelatin for use in an
inhaler or insufflator may be formulated containing a powder mix of the
compound and a suitable powder base such as lactose or starch. The
compounds may be formulated for parenteral administration by injection,
e.g., by bolus injection or continuous infusion. Formulations for
injection may be presented in unit dosage form, e.g., in ampoules or in
multi-dose containers, with an added preservative. The compositions may
take such forms as suspensions, solutions, or emulsions in oily or aqueous
vehicles, and may contain formulatory agents such as suspending,
stabilizing, and/or dispersing agents. Alternatively, the active
ingredient may be in powder form for constitution with a suitable vehicle,
e.g., sterile pyrogen-free water, before use. The compounds may also be
formulated in rectal compositions such as suppositories or retention
enemas, e.g., containing conventional suppository bases such as cocoa
butter or other glycerides. In addition to the formulations described
previously, the compounds may also be formulated as a depot preparation.
Such long acting formulations may be administered by implantation (for
example subcutaneously or intramuscularly) or by intramuscular injection.
Thus, for example, the compounds may be formulated with suitable polymeric
or hydrophobic materials (for example as an emulsion in an acceptable oil)
or ion exchange resins, or as sparingly soluble derivatives, for example,
as a sparingly soluble salt.
For administration by inhalation, the compounds are delivered in the form
of an aerosol spray from pressured container or dispenser which contains a
suitable propellant, e.g., a gas such as carbon dioxide, or a nebulizer.
Systemic administration can also be by transmucosal or transdermal means.
For transmucosal or transdermal administration, penetrants appropriate to
the barrier to be permeated are used in the formulation. Such penetrants
are generally known in the art, and include, for example, for transmucosal
administration, detergents, bile salts, and fusidic acid derivatives.
Transmucosal administration can be accomplished through the use of nasal
sprays or suppositories. For transdermal administration, the active
compounds are formulated into ointments, salves, gels, or creams as
generally known in the art.
Principles and considerations involved in preparing such compositions, as
well as guidance in the choice of components are provided, for example, in
Remington: The Science And Practice Of Pharmacy 19th ed. (Alfonso R.
Gennaro, et al., editors) Mack Pub. Co., Easton, Pa.: 1995; Drug
Absorption Enhancement: Concepts, Possibilities, Limitations, And Trends,
Harwood Academic Publishers, Langhorne, Pa., 1994; and Peptide And Protein
Drug Delivery (Advances In Parenteral Sciences, Vol. 4), 1991, M. Dekker,
New York.
The active ingredients can also be entrapped in microcapsules prepared,
for example, by coacervation techniques or by interfacial polymerization,
for example, hydroxymethylcellulose or gelatin-microcapsules and poly-(methylmethacrylate)
microcapsules, respectively, in colloidal drug delivery systems (for
example, liposomes, albumin microspheres, microemulsions, nano-particles,
and nanocapsules) or in macroemulsions. The formulations to be used for in
vivo administration must be sterile. This is readily accomplished by
filtration through sterile filtration membranes.
Sustained-release preparations can be prepared. Suitable examples of
sustained-release preparations include semipermeable matrices of solid
hydrophobic polymers containing the antibody, which matrices are in the
form of shaped articles, e.g., films, or microcapsules. Examples of
sustained-release matrices include polyesters, hydrogels (for example,
poly(2-hydroxyethyl-methacrylate), or poly(vinylalcohol)), polylactides
(U.S. Pat. No. 3,773,919), copolymers of L-glutamic acid and
gamma-ethyl-L-glutamate, non-degradable ethylene-vinyl acetate, degradable
lactic acid-glycolic acid copolymers such as the LUPRON DEPOT.TM. (injectable
microspheres composed of lactic acid-glycolic acid copolymer and
leuprolide acetate), and poly-D-(-)-3-hydroxybutyric acid. While polymers
such as ethylene-vinyl acetate and lactic acid-glycolic acid enable
release of molecules for over 100 days, certain hydrogels release proteins
for shorter time periods.
In one embodiment, the active compounds are prepared with carriers that
will protect the compound against rapid elimination from the body, such as
a controlled release formulation, including implants and microencapsulated
delivery systems. Biodegradable, biocompatible polymers can be used, such
as ethylene vinyl acetate, polyanhydrides, polyglycolic acid, collagen,
polyorthoesters, and polylactic acid. Methods for preparation of such
formulations will be apparent to those skilled in the art. The materials
can also be obtained commercially from Alza Corporation and Nova
Pharmaceuticals, Inc. Liposomal suspensions (including liposomes targeted
to infected cells with monoclonal antibodies to viral antigens) can also
be used as pharmaceutically acceptable carriers. These can be prepared
according to methods known to those skilled in the art, for example, as
described in U.S. Pat. No. 4,522,811.
It is especially advantageous to formulate oral or parenteral compositions
in dosage unit form for ease of administration and uniformity of dosage.
Dosage unit form as used herein refers to physically discrete units suited
as unitary dosages for the subject to be treated; each unit containing a
predetermined quantity of active compound calculated to produce the
desired therapeutic effect in association with the required pharmaceutical
carrier. The specification for the dosage unit forms of the invention are
dictated by and directly dependent on the unique characteristics of the
active compound and the particular therapeutic effect to be achieved, and
the limitations inherent in the art of compounding such an active compound
for the treatment of individuals.
The nucleic acid molecules of the invention can be inserted into vectors
and used as gene therapy vectors. Gene therapy vectors can be delivered to
a subject by, for example, intravenous injection, local administration
(see, e.g., U.S. Pat. No. 5,328,470) or by stereotactic injection (see,
e.g., Chen, et al., 1994. Proc. Natl. Acad. Sci. USA 91: 3054-3057). The
pharmaceutical preparation of the gene therapy vector can include the gene
therapy vector in an acceptable diluent, or can comprise a slow release
matrix in which the gene delivery vehicle is imbedded. Alternatively,
where the complete gene delivery vector can be produced intact from
recombinant cells, e.g., retroviral vectors, the pharmaceutical
preparation can include one or more cells that produce the gene delivery
system. The pharmaceutical compositions can be included in a container,
pack, or dispenser together with instructions for administration.
A therapeutically effective dose refers to that amount of the therapeutic
complex sufficient to result in amelioration or delay of symptoms.
Toxicity and therapeutic efficacy of such compounds can be determined by
standard pharmaceutical procedures in cell cultures or experimental
animals, e.g., for determining the LD50 (the dose lethal to 50% of the
population) and the ED50 (the dose therapeutically effective in 50% of the
population). The dose ratio between toxic and therapeutic effects is the
therapeutic index and it can be expressed as the ratio LD50/ED50.
Compounds that exhibit large therapeutic indices are preferred. While
compounds that exhibit toxic side effects may be used, care should be
taken to design a delivery system that targets such compounds to the site
of affected tissue in order to minimize potential damage to uninfected
cells and, thereby, reduce side effects. The data obtained from the cell
culture assays and animal studies can be used in formulating a range of
dosage for use in humans. The dosage of such compounds lies preferably
within a range of circulating concentrations that include the ED50 with
little or no toxicity. The dosage may vary within this range depending
upon the dosage form employed and the route of administration utilized.
For any compound used in the method of the invention, the therapeutically
effective dose can be estimated initially from cell culture assays. A dose
may be formulated in animal models to achieve a circulating plasma
concentration range that includes the IC50 (i.e., the concentration of the
test compound which achieves a half-maximal inhibition of symptoms) as
determined in cell culture. Such information can be used to more
accurately determine useful doses in humans. Levels in plasma may be
measured, for example, by high performance liquid chromatography.
Pharmaceutical compositions may be formulated in conventional manner using
one or more physiologically acceptable carriers or excipients. Thus, the
compounds and their physiologically acceptable salts and solvates may be
formulated for administration by inhalation or insufflation (either
through the mouth or the nose) or oral, buccal, intravenous,
intraperitoneal, parenteral or rectal administration.
Also disclosed according to the present invention is a kit or system
utilizing any one of the methods, selection strategies, materials, or
components described herein. Exemplary kits according to the present
disclosure will optionally, additionally include instructions for
performing methods or assays, packaging materials, one or more containers
which contain an assay, a device or system components, or the like.
In an additional aspect, the present invention provides kits embodying the
complex and methods of using disclosed herein. Kits of the invention
optionally include one or more of the following: (1) polypeptide or
nucleic acid components described herein; (2) instructions for practicing
the methods described herein, and/or for operating the selection procedure
herein; (3) one or more detection assay components; (4) a container for
holding nucleic acids or polypeptides, other nucleic acids, transgenic
plants, animals, cells, or the like and, (5) packaging materials.
Claim 1 of 4 Claims
1. A method of inhibiting or reducing the
aggregation of polyglutamine-containing proteins associated with
polyglutamine diseases comprising: providing an oligonucleotide of from 15
to 50 nucleotides, wherein at least 60% of the nucleotides are guanosine
nucleotides; providing a polyglutamine-containing protein or a protein
aggregate; and contacting the polyglutamine-containing protein or protein
aggregate with an effective amount of the oligonucleotide sufficient to
inhibit or reduce protein aggregation.
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