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Title:
IGF-I protein variants for treating IGFBP-1-related disorders
United States Patent: 8,097,587
Issued: January 17, 2012
Inventors: Dubaquie; Yves
(San Francisco, CA), Fielder; Paul J. (Redwood City, CA), Lowman; Henry B.
(El Granada, CA), Mortensen; Deborah L. (Pacifica, CA)
Assignee: Genentech, Inc.
(South San Francisco, CA)
Appl. No.: 11/512,046
Filed:
August 28, 2006
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Pharm Bus Intell
& Healthcare Studies
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Abstract
IGF-I variants having an alanine, glycine,
or serine amino acid residue at position 16, 25, 49 or at positions 3 and
49 of native-sequence IGF-I are provided that are useful to treat a
disorder characterized by dysregulation of the GH/IGF axis in a mammal,
such as a renal disorder.
Description of the
Invention
SUMMARY OF THE INVENTION
Accordingly, in one embodiment, the invention provides an IGF-I variant
wherein the amino acid residue at position 16, 25, or 49 or the amino acid
residues at positions 3 and 49 of native-sequence human IGF-I are replaced
with an alanine, a glycine, or a serine residue.
Also provided herein is a composition comprising the variant in a carrier,
preferably a pharmaceutically acceptable carrier. Preferably, this
composition is sterile.
Additionally provided herein is a method for treating a disorder
characterized by dysregulation of the GH/IGF axis in a mammal comprising
administering to the mammal an effective amount of the variant as
described above. The mammal is preferably human and the disorder is
preferably a renal disorder, more preferably renal failure.
The peptide herein can be administered alone or together with an active
agent for the particular disorder being treated, for example, a renally-active
agent such as BQ-123 for renal disorders.
Also contemplated herein is a kit comprising a container containing a
pharmaceutical composition containing the peptide herein and instructions
directing the user to utilize the composition for treating a disorder
characterized by dysregulation of the GH/IGF axis in a mammal. If the
disorder is a renal disorder, this kit may optionally further comprise a
container containing a renally-active molecule.
For identification of the peptides herein, human IGF-I was displayed
monovalently on filamentous phagemid particles (U.S. Pat. Nos. 5,750,373
and 5,821,047), and a complete alanine-scanning mutagenesis thereof
(Cunningham and Wells, Science, 244: 1081-1085 (1989); U.S. Pat. No.
5,834,250) was performed by phage display ("turbo-ala scan") (Cunningham
et al., EMBO J., 13: 2508-2515 (1994); Lowman, Methods Mol. Biol., 87:
249-264 (1998)). The mutant IGF-phagemids were used to map the binding
determinants on IGF-I for IGFBP-1 and IGFBP-3. The alanine scanning
reveals specificity determinants for these binding proteins, so as to
generate binding-protein-specific IGF variants that bind specifically to
IGFBP-1 or IGFBP-3 to modulate their clearance half-life, improve
proteolytic stability, or alter their tissue distribution in vivo. These
mutants should also be useful for mapping the functional binding site for
IGF receptor, whose crystal structure was recently reported (Garrett et
al., supra). In addition, it may be of interest to map the epitopes of
various IGF-binding antibodies or of other peptides or proteins that bind
to IGF-I.
DESCRIPTION OF THE PREFERRED EMBODIMENTS
Modes for Carrying Out the Invention
The invention herein relates, in one aspect, to an IGF-I variant wherein
the amino acid(s) of wild-type human IGF-I at position 16, 25, or 49 or at
positions 3 and 49 of native-sequence human IGF-I are replaced with an
alanine, a glycine, and/or a serine residue. Preferably, one or both of
the amino acids in question are replaced by an alanine or glycine residue,
most preferably alanine.
The peptides of this invention can be made by chemical synthesis or by
employing recombinant technology. These methods are known in the art.
Chemical synthesis, especially solid phase synthesis, is preferred for
short (e.g., less than 50 residues) peptides or those containing unnatural
or unusual amino acids such as D-Tyr, Ornithine, amino adipic acid, and
the like. Recombinant procedures are preferred for longer polypeptides.
When recombinant procedures are selected, a synthetic gene may be
constructed de novo or a natural gene may be mutated by, for example,
cassette mutagenesis. Set forth below are exemplary general recombinant
procedures.
From a purified IGF and its amino acid sequence, for example, an IGF
variant that is a peptidyl mutant of an IGF parent molecule may be
produced using recombinant DNA techniques. These techniques contemplate,
in simplified form, taking the gene, either natural or synthetic, encoding
the peptide; inserting it into an appropriate vector; inserting the vector
into an appropriate host cell; culturing the host cell to cause expression
of the gene; and recovering or isolating the peptide produced thereby.
Preferably, the recovered peptide is then purified to a suitable degree.
Somewhat more particularly, the DNA sequence encoding a peptidyl IGF
variant is cloned and manipulated so that it may be expressed in a
convenient host. DNA encoding parent polypeptides can be obtained from a
genomic library, from cDNA derived from mRNA from cells expressing the
peptide, or by synthetically constructing the DNA sequence (Sambrook et
al., Molecular Cloning: A Laboratory Manual (2d ed.), Cold Spring Harbor
Laboratory, N.Y., 1989).
The parent DNA is then inserted into an appropriate plasmid or vector
which is used to transform a host cell. In general, plasmid vectors
containing replication and control sequences which are derived from
species compatible with the host cell are used in connection with those
hosts. The vector ordinarily carries a replication site, as well as
sequences which encode proteins or peptides that are capable of providing
phenotypic selection in transformed cells.
For example, E. coli may be transformed using pBR322, a plasmid derived
from an E. coli species (Mandel et al., J. Mol. Biol. 53: 154 (1970)).
Plasmid pBR322 contains genes for ampicillin and tetracycline resistance,
and thus provides easy means for selection. Other vectors include
different features such as different promoters, which are often important
in expression. For example, plasmids pKK223-3, pDR720, and pPL-lambda
represent expression vectors with the tac, trp, or P.sub.L promoters that
are currently available (Pharmacia Biotechnology).
A preferred vector is pB0475. This vector contains origins of replication
for phage and E. coli that allow it to be shuttled between such hosts,
thereby facilitating both mutagenesis and expression (Cunningham et al.,
Science 243: 1330-1336 (1989); U.S. Pat. No. 5,580,723). Other preferred
vectors are pR1T5 and pR1T2T (Pharmacia Biotechnology). These vectors
contain appropriate promoters followed by the Z domain of protein A,
allowing genes inserted into the vectors to be expressed as fusion
proteins.
Other preferred vectors can be constructed using standard techniques by
combining the relevant traits of the vectors described above. Relevant
traits include the promoter, the ribosome binding site, the decorsin or
ornatin gene or gene fusion (the Z domain of protein A and decorsin or
ornatin and its linker), the antibiotic resistance markers, and the
appropriate origins of replication.
The host cell may be prokaryotic or eukaryotic. Prokaryotes are preferred
for cloning and expressing DNA sequences to produce parent IGF-I
polypeptide, segment-substituted peptides, residue-substituted peptides,
and peptide variants. For example, E. coli K12 strain 294 (ATCC No. 31446)
may be used as well as E. coli B, E. coli X1776 (ATCC No. 31537), and E.
coli c600 and c600hfl, E. coli W3110 (F-, gamma-, prototrophic/ATCC No.
27325), bacilli such as Bacillus subtilis, and other enterobacteriaceae
such as Salmonella typhimurium or Serratia marcesans, and various
Pseudomonas species. The preferred prokaryote is E. coli W3110 (ATCC
27325). When expressed by prokaryotes the peptides typically contain an
N-terminal methionine or a formyl methionine and are not glycosylated. In
the case of fusion proteins, the N-terminal methionine or formyl
methionine resides on the amino terminus of the fusion protein or the
signal sequence of the fusion protein. These examples are, of course,
intended to be illustrative rather than limiting.
In addition to prokaryotes, eukaryotic organisms, such as yeast cultures,
or cells derived from multicellular organisms may be used. In principle,
any such cell culture is workable. However, interest has been greatest in
vertebrate cells, and propagation of vertebrate cells in culture (tissue
culture) has become a reproducible procedure. Tissue Culture, Academic
Press, Kruse and Patterson, editors (1973). Examples of such useful host
cell lines are VERO and HeLa cells, Chinese Hamster Ovary (CHO) cell
lines, W138, 293, BHK, COS-7 and MDCK cell lines.
A variation on the above procedures contemplates the use of gene fusions,
wherein the gene encoding the desired peptide is associated, in the
vector, with a gene encoding another protein or a fragment of another
protein. This results in the desired peptide being produced by the host
cell as a fusion with another protein or peptide. The "other" protein or
peptide is often a protein or peptide which can be secreted by the cell,
making it possible to isolate and purify the desired peptide from the
culture medium and eliminating the necessity of destroying the host cells
which arises when the desired peptide remains inside the cell.
Alternatively, the fusion protein can be expressed intracellularly. It is
useful to use fusion proteins that are highly expressed.
The use of gene fusions, though not essential, can facilitate the
expression of heterologous peptides in E. coli as well as the subsequent
purification of those gene products (Harris, in Genetic Engineering,
Williamson, R., Ed. (Academic Press, London, Vol. 4, 1983), p. 127;
Ljungquist et al., Eur. J. Biochem., 186: 557-561 (1989) and Ljungquist et
al., Eur. J. Biochem., 186: 563-569 (1989)). Protein A fusions are often
used because the binding of protein A, or more specifically the Z domain
of protein A, to IgG provides an "affinity handle" for the purification of
the fused protein. It has also been shown that many heterologous proteins
are degraded when expressed directly in E. coli, but are stable when
expressed as fusion proteins. Marston, Biochem J. 240: 1 (1986).
Fusion proteins can be cleaved using chemicals, such as cyanogen bromide,
which cleaves at a methionine, or hydroxylamine, which cleaves between an
Asn and Gly residue. Using standard recombinant DNA methodology, the
nucleotide base pairs encoding these amino acids may be inserted just
prior to the 5' end of the gene encoding the desired peptide.
Alternatively, one can employ proteolytic cleavage of fusion protein
(Carter, in Protein Purification: From Molecular Mechanisms to Large-Scale
Processes, Ladisch et al., eds. (American Chemical Society Symposium
Series No. 427, 1990), Ch 13, pages 181-193).
Proteases such as Factor Xa, thrombin, and subtilisin or its mutants, and
a number of others have been successfully used to cleave fusion proteins.
Typically, a peptide linker that is amenable to cleavage by the protease
used is inserted between the "other" protein (e.g., the Z domain of
protein A) and the desired peptide. Using recombinant DNA methodology, the
nucleotide base pairs encoding the linker are inserted between the genes
or gene fragments coding for the other proteins. Proteolytic cleavage of
the partially purified fusion protein containing the correct linker can
then be carried out on either the native fusion protein, or the reduced or
denatured fusion protein.
The peptide may or may not be properly folded when expressed as a fusion
protein. Also, the specific peptide linker containing the cleavage site
may or may not be accessible to the protease. These factors determine
whether the fusion protein must be denatured and refolded, and if so,
whether these procedures are employed before or after cleavage.
When denaturing and refolding are needed, typically the peptide is treated
with a chaotrope, such a guanidine HCl, and is then treated with a redox
buffer, containing, for example, reduced and oxidized dithiothreitol or
glutathione at the appropriate ratios, pH, and temperature, such that the
peptide is refolded to its native structure.
When peptides are not prepared using recombinant DNA technology, they are
preferably prepared using solid-phase synthesis, such as that generally
described by Merrifield, J. Am. Chem. Soc., 85: 2149 (1963), although
other equivalent chemical syntheses known in the art are employable.
Solid-phase synthesis is initiated from the C-terminus of the peptide by
coupling a protected .alpha.-amino acid to a suitable resin. Such a
starting material can be prepared by attaching an .alpha.-amino-protected
amino acid by an ester linkage to a chloromethylated resin or a
hydroxymethyl resin, or by an amide bond to a BHA resin or MBHA resin. The
preparation of the hydroxymethyl resin is described by Bodansky et al.,
Chem. Ind. (London), 38: 1597-1598 (1966). Chloromethylated resins are
commercially available from BioRad Laboratories, Richmond, Calif. and from
Lab. Systems, Inc. The preparation of such a resin is described by Stewart
et al., "Solid Phase Peptide Synthesis" (Freeman & Co., San Francisco
1969), Chapter 1, pp. 1-6. BHA and MBHA resin supports are commercially
available and are generally used only when the desired polypeptide being
synthesized has an unsubstituted amide at the C-terminus.
The amino acids are coupled to the peptide chain using techniques well
known in the art for the formation of peptide bonds. One method involves
converting the amino acid to a derivative that will render the carboxyl
group more susceptible to reaction with the free N-terminal amino group of
the peptide fragment. For example, the amino acid can be converted to a
mixed anhydride by reaction of a protected amino acid with
ethylchloroformate, phenyl chloroformate, sec-butyl chloroformate,
isobutyl chloroformate, pivaloyl chloride or like acid chlorides.
Alternatively, the amino acid can be converted to an active ester such as
a 2,4,5-trichlorophenyl ester, a pentachlorophenyl ester, a
pentafluorophenyl ester, a p-nitrophenyl ester, a N-hydroxysuccinimide
ester, or an ester formed from 1-hydroxybenzotriazole.
Another coupling method involves use of a suitable coupling agent such as
N,N'-dicyclohexylcarbodimide or N,N'-diisopropyl-carbodiimide. Other
appropriate coupling agents, apparent to those skilled in the art, are
disclosed in E. Gross & J. Meienhofer, The Peptides: Analysis, Structure,
Biology, Vol. I: Major Methods of Peptide Bond Formation (Academic Press,
New York, 1979).
It should be recognized that the .alpha.-amino group of each amino acid
employed in the peptide synthesis must be protected during the coupling
reaction to prevent side reactions involving their active .alpha.-amino
function. It should also be recognized that certain amino acids contain
reactive side-chain functional groups (e.g., sulfhydryl, amino, carboxyl,
and hydroxyl) and that such functional groups must also be protected with
suitable protecting groups to prevent a chemical reaction from occurring
at that site during both the initial and subsequent coupling steps.
Suitable protecting groups, known in the art, are described in Gross and
Meienhofer, The Peptides: Analysis, Structure, Biology Vol. 3: "Protection
of Functional' Groups in Peptide Synthesis" (Academic Press, New York,
1981).
In the selection of a particular side-chain protecting group to be used in
synthesizing the peptides, the following general rules are followed. An
.alpha.-amino protecting group (a) must render the .alpha.-amino function
inert under the conditions employed in the coupling reaction, (b) must be
readily removable after the coupling reaction under conditions that will
not remove side-chain protecting groups and will not alter the structure
of the peptide fragment, and (c) must eliminate the possibility of
racemization upon activation immediately prior to coupling. A side-chain
protecting group (a) must render the side chain functional group inert
under the conditions employed in the coupling reaction, (b) must be stable
under the conditions employed in removing the .alpha.-amino protecting
group, and (c) must be readily removable upon completion of the desired
amino acid peptide under reaction conditions that will not alter the
structure of the peptide chain.
It will be apparent to those skilled in the art that the protecting groups
known to be useful for peptide synthesis will vary in reactivity with the
agents employed for their removal. For example, certain protecting groups
such as triphenylmethyl and 2-(p-biphenylyl)isopropyloxycarbonyl are very
labile and can be cleaved under mild acid conditions. Other protecting
groups, such as t-butyloxycarbonyl (BOC), t-amyloxycarbonyl.
adamantyl-oxycarbonyl, and p-methoxybenzyloxycarbonyl are less labile and
require moderately strong acids, such as trifluoroacetic, hydrochloric, or
boron trifluoride in acetic acid, for their removal. Still other
protecting groups, such as benzyloxycarbonyl (CBZ or Z),
halobenzyloxycarbonyl, p-nitrobenzyloxycarbonyl cycloalkyloxycarbonyl, and
isopropyloxycarbonyl, are even less labile and require stronger acids,
such as hydrogen fluoride, hydrogen bromide, or boron trifluoroacetate in
trifluoroacetic acid, for their removal. Among the classes of useful amino
acid protecting groups are included:
(1) for an .alpha.-amino group, (a) aromatic urethane-type protecting
groups, such as fluorenylmethyloxycarbonyl (FMOC) CBZ, and substituted CBZ,
such as, e.g., p-chlorobenzyloxycarbonyl, p-6-nitrobenzyloxycarbonyl, p-bromobenzyloxycarbonyl,
and p-methoxybenzyloxycarbonyl, o-chlorobenzyloxycarbonyl,
2,4-dichlorobenzyloxycarbonyl, 2,6-dichlorobenzyloxycarbonyl, and the
like; (b) aliphatic urethane-type protecting groups, such as BOC, t-amyloxycarbonyl,
isopropyloxycarbonyl, 2-(p-biphenylyl)-isopropyloxycarbonyl,
allyloxycarbonyl and the like; (c) cycloalkyl urethane-type protecting
groups, such as cyclopentyloxycarbonyl, adamantyloxycarbonyl, and
cyclohexyloxycarbonyl; and d) allyloxycarbonyl. The preferred
.alpha.-amino protecting groups are BOC or FMOC.
(2) for the side chain amino group present in Lys, protection may be by
any of the groups mentioned above in (1) such as BOC, p-chlorobenzyloxycarbonyl,
etc.
(3) for the guanidino group of Arg, protection may be by nitro, tosyl, CBZ,
adamantyloxycarbonyl, 2,2,5,7,8-pentamethylchroman-6-sulfonyl or
2,3,6-trimethyl-4-methoxyphenylsulfonyl, or BOC.
(4) for the hydroxyl group of Ser, Thr, or Tyr, protection may be, for
example, by C1-C4 alkyl, such as t-butyl; benzyl (BZL); substituted BZL,
such as p-methoxybenzyl, p-nitrobenzyl, p-chlorobenzyl, o-chlorobenzyl,
and 2,6-dichlorobenzyl.
(5) for the carboxyl group of Asp or Glu, protection may be, for example,
by esterification using groups such as BZL, t-butyl, cyclohexyl,
cyclopentyl, and the like.
(6) for the imidazole nitrogen of His, the tosyl moiety is suitably
employed.
(7) for the phenolic hydroxyl group of Tyr, a protecting group such as
tetrahydropyranyl, tert-butyl, trityl, BZL, chlorobenzyl, 4-bromobenzyl,
or 2,6-dichlorobenzyl is suitably employed. The preferred protecting group
is 2,6-dichlorobenzyl.
(8) for the side chain amino group of Asn or Gln, xanthyl (Xan) is
preferably employed.
(9) for Met, the amino acid is preferably left unprotected.
(10) for the thio group of Cys, p-methoxybenzyl is typically employed.
The C-terminal amino acid, e.g., Lys, is protected at the N-amino position
by an appropriately selected protecting group, in the case of Lys, BOC.
The BOC-Lys-OH can be first coupled to the benzyhydrylamine or
chloromethylated resin according to the procedure set forth in Horiki et
al., Chemistry Letters 165-168 (1978) or using isopropylcarbodiimide at
about 25.degree. C. for 2 hours with stirring. Following the coupling of
the BOC-protected amino acid to the resin support, the .alpha.-amino
protecting group is removed, as by using trifluoroacetic acid (TFA) in
methylene chloride or TFA alone. The deprotection is carried out at a
temperature between about 0.degree. C. and room temperature. Other
standard cleaving reagents, such as HCl in dioxane, and conditions for
removal of specific .alpha.-amino protecting groups are described in the
literature.
After removal of the .alpha.-amino protecting group, the remaining
.alpha.-amino and side-chain protected amino acids are coupled stepwise
within the desired order. As an alternative to adding each amino acid
separately in the synthesis, some may be coupled to one another prior to
addition to the solid-phase synthesizer. The selection of an appropriate
coupling reagent is within the skill of the art. Particularly suitable as
a coupling reagent is N,N'-dicyclohexyl carbodiimide or
diisopropylcarbodiimide.
Each protected amino acid or amino acid sequence is introduced into the
solid-phase reactor in excess, and the coupling is suitably carried out in
a medium of dimethylformamide (DMF) or CH.sub.2Cl.sub.2 or mixtures
thereof. If incomplete coupling occurs, the coupling procedure is repeated
before removal of the N-amino protecting group prior to the coupling of
the next amino acid. The success of the coupling reaction at each stage of
the synthesis may be monitored. A preferred method of monitoring the
synthesis is by the ninhydrin reaction, as described by Kaiser et al.,
Anal. Biochem, 34: 595 (1970). The coupling reactions can be performed
automatically using well known methods, for example, a BIOSEARCH 9500.TM.
peptide synthesizer.
Upon completion of the desired peptide sequence, the protected peptide
must be cleaved from the resin support; and all protecting groups must be
removed. The cleavage reaction and removal of the protecting groups is
suitably accomplished simultaneously or stepwise. When the resin support
is a chloro-methylated polystyrene resin, the bond anchoring the peptide
to the resin is an ester linkage formed between the free carboxyl group of
the C-terminal residue and one of the many chloromethyl groups present on
the resin matrix. It will be appreciated that the anchoring bond can be
cleaved by reagents that are known to be capable of breaking an ester
linkage and of penetrating the resin matrix.
One especially convenient method is by treatment with liquid anhydrous
hydrogen fluoride. This reagent not only will cleave the peptide from the
resin but also will remove all protecting groups. Hence, use of this
reagent will directly afford the fully deprotected peptide. When the
chloromethylated resin is used, hydrogen fluoride treatment results in the
formation of the free peptide acids. When the benzhydrylamine resin is
used, hydrogen fluoride treatment results directly in the free peptide
amines. Reaction with hydrogen fluoride in the presence of anisole and
dimethylsulfide at 0.degree. C. for one hour will simultaneously remove
the side-chain protecting groups and release the peptide from the resin.
When it is desired to cleave the peptide without removing protecting
groups, the protected peptide-resin can undergo methanolysis to yield the
protected peptide in which the C-terminal carboxyl group is methylated.
The methyl ester is then hydrolyzed under mild alkaline conditions to give
the free C-terminal carboxyl group. The protecting groups on the peptide
chain then are removed by treatment with a strong acid, such as liquid
hydrogen fluoride. A particularly useful technique for methanolysis is
that of Moore et al., Peptides. Proc. Fifth Amer. Pept. Symp., M. Goodman
and J. Meienhofer, Eds., (John Wiley, N.Y., 1977), p. 518-521, in which
the protected peptide-resin is treated with methanol and potassium cyanide
in the presence of crown ether.
Another method for cleaving the protected peptide from the resin when the
chloromethylated resin is employed is by ammonolysis or by treatment with
hydrazine. If desired, the resulting C-terminal amide or hydrazide can be
hydrolyzed to the free C-terminal carboxyl moiety, and the protecting
groups can be removed conventionally.
It will also be recognized that the protecting group present on the
N-terminal .alpha.-amino group may be removed preferentially either before
or after the protected peptide is cleaved from the support.
Purification of the peptides of the invention is typically achieved using
conventional procedures such as preparative HPLC (including reversed phase
HPLC) or other known chromatographic techniques such as gel permeation,
ion exchange, partition chromatography, affinity chromatography (including
monoclonal antibody columns) or countercurrent distribution.
The peptides of this invention may be stabilized by polymerization. This
may be accomplished by crosslinking monomer chains with polyfunctional
crosslinking agents, either directly or indirectly, through
multi-functional polymers. Ordinarily, two substantially identical
polypeptides are crosslinked at their C- or N-termini using a bifunctional
crosslinking agent. The agent is used to crosslink the terminal amino
and/or carboxyl groups. Generally, both terminal carboxyl groups or both
terminal amino groups are crosslinked to one another, although by
selection of the appropriate crosslinking agent the alpha amino of one
polypeptide is crosslinked to the terminal carboxyl group of the other
polypeptide. Preferably, the polypeptides are substituted at their
C-termini with cysteine. Under conditions well known in the art a
disulfide bond can be formed between the terminal cysteines, thereby
crosslinking the polypeptide chains. For example, disulfide bridges are
conveniently formed by metal-catalyzed oxidation of the free cysteines or
by nucleophilic substitution of a suitably modified cysteine residue.
Selection of the crosslinking agent will depend upon the identities of the
reactive side chains of the amino acids present in the polypeptides. For
example, disulfide crosslinking would not be preferred if cysteine was
present in the polypeptide at additional sites other than the C-terminus.
Also within the scope hereof are peptides crosslinked with methylene
bridges.
Suitable crosslinking sites on the peptides, aside from the N-terminal
amino and C-terminal carboxyl groups, include epsilon amino groups found
on lysine residues, as well as amino, imino, carboxyl, sulfhydryl and
hydroxyl groups located on the side chains of internal residues of the
peptides or residues introduced into flanking sequences. Crosslinking
through externally added crosslinking agents is suitably achieved, e.g.,
using any of a number of reagents familiar to those skilled in the art,
for example, via carbodiimide treatment of the polypeptide. Other examples
of suitable multi-functional (ordinarily bifunctional) crosslinking agents
are found in the literature.
The peptides of this invention also may be conformationally stabilized by
cyclization. The peptides ordinarily are cyclized by covalently bonding
the--and C-terminal domains of one peptide to the corresponding domain of
another peptide, of this invention so as to form cyclo-oligomers
containing two or more iterated peptide sequences, each internal peptide
having substantially the same sequence. Further, cyclized peptides
(whether cyclo-oligomers or cyclo-monomers) are crosslinked to form 1-3
cyclic structures having from 2 to 6 peptides comprised therein. The
peptides preferably are not covalently bonded through .alpha.-amino and
main chain carboxyl groups (head to tail), but rather are crosslinked
through the side chains of residues located in the--and C-terminal
domains. The linking sites thus generally will be between the side chains
of the residues.
Many suitable methods per se are known for preparing mono- or poly-cyclized
peptides as contemplated herein. Lys/Asp cyclization has been accomplished
using Na-Boc-amino acids on solid-phase support with Fmoc/9-fluorenylmethyl
(OFm) side-chain protection for Lys/Asp; the process is completed by
piperidine treatment followed by cyclization.
Glu and Lys side chains also have been crosslinked in preparing cyclic or
bicyclic peptides: the peptide is synthesized by solid phase chemistry on
a p-methylbenzhydrylamine resin. The peptide is cleaved from the resin and
deprotected. The cyclic peptide is formed using diphenylphosphorylazide in
diluted methylformamide. For an alternative procedure, see Schiller et
al., Peptide Protein Res. 25: 171-177 (1985). See also U.S. Pat. No.
4,547,489.
Disulfide crosslinked or cyclized peptides are generated by conventional
methods. The method of Pelton et al. (J. Med. Chem., 29: 2370-2375 (1986))
is suitable, except that a greater proportion of cyclo-oligomers are
produced by conducting the reaction in more concentrated solutions than
the dilute reaction mixture described by Pelton et al., for the production
of cyclo-monomers. The same chemistry is useful for synthesis of dimers or
cyclo-oligomers or cyclo-monomers. Also useful are thiomethylene bridges.
Lebl and Hruby, Tetrahedron Letters, 25: 2067-2068 (1984). See also Cody
et al., J. Med. Chem., 28: 583 (1985).
The desired cyclic or polymeric peptides are purified by gel filtration
followed by reversed-phase high pressure liquid chromatography or other
conventional procedures. The peptides are sterile filtered and formulated
into conventional pharmacologically acceptable vehicles.
The starting materials required for the processes described herein are
known in the literature or can be prepared using known methods and known
starting materials.
If in the peptides being created carbon atoms bonded to four nonidentical
substituents are asymmetric, then the peptides may exist as
diastereoisomers, enantiomers or mixtures thereof. The syntheses described
above may employ racemates, enantiomers or diastereomers as starting
materials or intermediates. Diastereomeric products resulting from such
syntheses may be separated by chromatographic or crystallization methods.
Likewise, enantiomeric product mixtures may be separated using the same
techniques or by other methods known in the art. Each of the asymmetric
carbon atoms, when present, may be in one of two configurations R) or S)
and both are within the scope of the present invention.
The peptides of this invention may be administered to the mammal by any
suitable technique, including oral, parenteral (e.g., intramuscular,
intraperitoneal, intravenous, or subcutaneous injection or infusion, or
implant), nasal, pulmonary, vaginal, rectal, sublingual, or topical routes
of administration, and can be formulated in dosage forms appropriate for
each route of administration. The specific route of administration will
depend, e.g., on the medical history of the patient, including any
perceived or anticipated side effects using the peptide, the type of
peptide being administered, and the particular type of disorder to be
corrected. Most preferably, the administration is by continuous infusion
(using, e.g., slow-release devices or minipumps such as osmotic pumps or
skin patches), or by injection (using, e.g., intravenous or subcutaneous
means).
The peptide to be used in the therapy will be formulated and dosed in a
fashion consistent with good medical practice, taking into account the
clinical condition of the individual patient (especially the side effects
of treatment with the peptide), the type of disorder, the site of
delivery, the method of administration, the scheduling of administration,
and other factors known to practitioners. The "effective amounts" of the
peptide for purposes herein are thus determined by such considerations and
must be amounts that result in bioavailability of the drugs to the mammal
and the desired effect.
A preferred administration is a chronic administration of about two times
per day for 4-8 weeks to reproduce the effects of IGF-1. Although
injection is preferred, chronic infusion may also be employed using an
infusion device for continuous subcutaneous (SC) infusions. An intravenous
bag solution may also be employed. The key factor in selecting an
appropriate dose for the disorder in question is the result obtained, as
measured, in the case of diabetes, for example, by decreases in blood
glucose so as to approximate the normal range, or by other criteria for
measuring treatment of the disorder as are deemed appropriate by the
medical practitioner.
As a general proposition, the total pharmaceutically effective amount of
the peptide administered parenterally per dose will be in a range that can
be measured by a dose-response curve. For example, IGFs bound to IGFBPs or
in the blood can be measured in body fluids of the mammal to be treated to
determine the dosing. Alternatively, one can administer increasing amounts
of the peptide to the patient and check the serum levels of the patient
for IGF-I and IGF-II. The amount of peptide to be employed can be
calculated on a molar basis based on these serum levels of IGF-I and IGF-II.
See Example 3 below on displacement of IGF-I tracer from IGFBPs present in
human serum.
Specifically, one method for determining appropriate dosing of the peptide
entails measuring IGF levels in a biological fluid such as a body or blood
fluid. Measuring such levels can be done by any means, including RIA and
ELISA. After measuring IGF levels, the fluid is contacted with the peptide
using single or multiple doses. After this contacting step, the IGF levels
are re-measured in the fluid. If the fluid IGF levels have fallen by an
amount sufficient to produce the desired efficacy for which the molecule
is to be administered, then the dose of the molecule can be adjusted to
produce maximal efficacy. This method may be carried out in vitro or in
vivo. Preferably, this method is carried out in vivo, i.e., after the
fluid is extracted from a mammal and the IGF levels measured, the peptide
herein is administered to the mammal using single or multiple doses (that
is, the contacting step is achieved by administration to a mammal) and
then the IGF levels are re-measured from fluid extracted from the mammal.
Another method for determining dosing is to use antibodies to the peptide
or another detection method for the peptide in the LIFA format. This would
allow detection of endogenous or exogenous IGFs bound to IGFBP and the
amount of peptide bound to the IGFBP.
Another method for determining dosing would be to measure the level of
"free" or active IGF in blood. For some uses the level of "free" IGF would
be a suitable marker of efficacy and effective doses or dosing.
For example, one method is described for detecting endogenous or exogenous
IGF bound to an IGF binding protein or the amount of the peptide herein or
detecting the level of unbound IGF in a biological fluid. This method
comprises:
(a) contacting the fluid with 1) a means for detecting the peptide that is
specific for the peptide (such as a first antibody specific for epitopes
on the peptide) attached to a solid-phase carrier, such that in the
presence of the peptide the IGF binding sites remain available on the
peptide for binding to the IGF binding protein, thereby forming a complex
between the means and the IGF binding protein; and 2) the peptide for a
period of time sufficient to saturate all available IGF binding sites on
the IGF binding protein, thereby forming a saturated complex;
(b) contacting the saturated complex with a detectably labeled second
means which is specific for the IGF binding protein (such as a second
antibody specific for epitopes on the IGFBP) which are available for
binding when the peptide is bound to the IGF binding protein; and
(c) quantitatively analyzing the amount of the labeled means bound as a
measure of the IGFBP in the biological fluid, and therefore as a measure
of the amount of bound peptide and IGF binding protein, bound IGF and IGF
binding protein, or active IGF present in the fluid.
Given the above methods for determining dosages, in general, the amount of
peptide that may be employed can be estimated, i.e., from about 10 .mu.g/kg/day
to 200 .mu.g/kg/day might be used, based on kg of patient body weight,
although, as noted above, this will be subject to a great deal of
therapeutic discretion. For example, with treatment of chronic renal
failure, the dose per day is preferably about 10 to 160 .mu.g/kg, more
preferably 20 to 100 .mu.g/kg, and most preferably about 25 to 75 .mu.g/kg.
A further method is provided to estimate the distribution of IGFs on
specific IGFBPs, e.g., on IGFBP-1 or IGFBP-3 using the LIFA format.
The peptide is suitably administered by a sustained-release system.
Suitable examples of sustained-release compositions include semi-permeable
polymer matrices in the form of shaped articles, e.g., films, or
microcapsules. Sustained-release matrices include polylactides (U.S. Pat.
No. 3,773,919, EP 58,481), copolymers of L-glutamic acid and
gamma-ethyl-L-glutamate (Sidman et al., Biopolymers, 22, 547-556(1983),
poly(2-hydroxyethyl methacrylate) (Langer et al., J. Biomed. Mater. Res.,
15: 167-277 (1981), and Langer, Chem. Tech. 12: 98-105 (1982), ethylene
vinyl acetate (Langer et al., supra) or poly-D-(-)-3-hydroxybutyric acid
(EP 133,988). Sustained-release compositions also include a liposomally
entrapped peptide. Liposomes containing the peptide are prepared by
methods known per se: DE 3,218,121; Epstein et al., Proc. Natl. Acad. Sci.
U.S.A., 82: 3688-3692 (1985); Hwang et al., Proc. Natl. Acad. Sci. U.S.A.,
77: 4030-4034 (1980); EP 52,322; EP 36,676; EP 88,046; EP 143,949; EP
142,641; Japanese Pat. Appln. 83-118008; U.S. Pat. Nos. 4,485,045 and
4,544,545; and EP 102,324. Ordinarily, the liposomes are of the small
(from or about 200 to 800 Angstroms) unilamellar type in which the lipid
content is greater than about 30 mol. percent cholesterol, the selected
proportion being adjusted for the most efficacious therapy.
PEGylated peptides having a longer life can also be employed, based on,
e.g., the conjugate technology described in WO 95/32003 published Nov. 30,
1995.
For parenteral administration, in one embodiment, the peptide is
formulated generally by mixing each at the desired degree of purity, in a
unit dosage injectable form (solution, suspension, or emulsion), with a
pharmaceutically, or parenterally, acceptable carrier, i.e., one that is
non-toxic to recipients at the dosages and concentrations employed and is
compatible with other ingredients of the formulation. For example, the
formulation preferably does not include oxidizing agents and other
peptides that are known to be deleterious to polypeptides.
Generally, the formulations are prepared by contacting the peptide
uniformly and intimately with liquid carriers or finely divided solid
carriers or both. Then, if necessary, the product is shaped into the
desired formulation. Preferably the carrier is a parenteral carrier, more
preferably a solution that is isotonic with the blood of the recipient.
Examples of such carrier vehicles include water, saline, Ringer's
solution, a buffered solution, and dextrose solution. Non-aqueous vehicles
such as fixed oils and ethyl oleate are also useful herein. The carrier
suitably contains minor amounts of additives such as substances that
enhance isotonicity and chemical stability. Such materials are non-toxic
to recipients at the dosages and concentrations employed, and include
buffers such as phosphate, citrate, succinate, acetic acid, and other
organic acids or their salts; antioxidants such as ascorbic acid; low
molecular weight (less than about ten residues) polypeptides, e.g.,
polyarginine or tripeptides; proteins, such as serum albumin, gelatin, or
immunoglobulins; hydrophilic polymers such as polyvinylpyrrolidone;
glycine; amino acids such as glutamic acid, aspartic acid, histidine, or
arginine; monosaccharides, disaccharides, and other carbohydrates
including cellulose or its derivatives, glucose, mannose, trehalose, or
dextrins; chelating agents such as EDTA; sugar alcohols such as mannitol
or sorbitol; counter-ions such as sodium; non-ionic surfactants such as
polysorbates, poloxamers, or polyethylene glycol (PEG); and/or neutral
salts, e.g., NaCl, KCl, MgCl.sub.2, CaCl.sub.2, etc.
The peptide typically formulated in such vehicles at a pH of from or about
4.5 to 8. It will be understood that use of certain of the foregoing
excipients, carriers, or stabilizers will result in the formation of salts
of the peptide. The final preparation may be a stable liquid or
lyophilized solid.
Typical formulations of the peptides as pharmaceutical compositions are
discussed below. About 0.5 to 500 mg of the peptide or mixture of
peptides, as the free acid or base form or as a pharmaceutically
acceptable salt, is compounded with a physiologically acceptable vehicle,
carrier, excipient, binder, preservative, stabilizer, flavor, etc., as
called for by accepted pharmaceutical practice. The amount of active
ingredient in these compositions is such that a suitable dosage in the
range indicated is obtained.
The peptide to be used for therapeutic administration must be sterile.
Sterility is readily accomplished by filtration through sterile filtration
membranes (e.g., 0.2 micron membranes). Therapeutic compositions generally
are placed into a container having a sterile access port, for example, an
intravenous solution bag or vial having a stopper pierceable by a
hypodermic injection needle.
The peptide ordinarily will be stored in unit or multi-dose containers,
for example, sealed ampules or vials, as an aqueous solution or as a
lyophilized formulation for reconstitution. As an example of a lyophilized
formulation, 10-mL vials are filled with 5 mL of sterile-filtered 1% (w/v)
aqueous solution of peptide, and the resulting mixture is lyophilized. The
infusion solution is prepared by reconstituting the lyophilized peptide
using bacteriostatic Water-for-Injection.
Combination therapy with the peptide herein and one or more other
appropriate reagents that increase total IGF in the blood or enhance the
effect of the peptide is also part of this invention. These reagents
generally allow the peptide herein to release the generated IGF. For
example, it is desirable to administer in conjunction with the peptide
other active molecules. For example, for wasting or catabolic conditions,
the peptide can be administered along with an appetite enhancer such as
MEGASE.TM..
In addition, the peptide is appropriately administered coupled to a
receptor or antibody or antibody fragment for administration.
Additional combination therapy would include a growth hormone such as
human growth hormone, IGFBP-3, or IGFBP-5.
In the treatment of hyperglycemic disorders, the peptide is suitably
administered along with an effective amount of a hypoglycemic agent such
as a sulfonylurea or any type of insulin. The hypoglycemic agent is
administered to the mammal by any suitable technique including
parenterally, intranasally, orally, or by any other effective route. Most
preferably, the administration is by the oral route. For example,
MICRONASE.TM. Tablets (glyburide) marketed by Upjohn in 1.25, 2.5, and 5
mg tablet concentrations are suitable for oral administration. The usual
maintenance dose for Type II diabetics, placed on this therapy, is
generally in the range of from or about 1.25 to 20 mg per day, which may
be given as a single dose or divided throughout the day as deemed
appropriate [Physician's Desk Reference, 2563-2565 (1995)]. Other examples
of glyburide-based tablets available for prescription include GLYNASE.TM.
brand drug (Upjohn) and DIABETA.TM. brand drug (Hoechst-Roussel).
GLUCOTROL.TM. (Pratt) is the trademark for a glipizide
(1-cyclohexyl-3-[p-[2-(5-methylpyrazine
carboxamide)ethyl]phenyl]sulfonyl]urea) tablet available in both 5 and 10
mg strengths and is also prescribed to Type II diabetics who require
hypoglycemic therapy following dietary control or in patients who have
ceased to respond to other sulfonylureas [Physician's Desk Reference,
1902-1903 (1995)]. Other hypoglycemic agents than sulfonylureas, such as
the biguanides (e.g., metformin and phenformin) or troglitozones, or other
drugs affecting insulin action may also be employed.
In the treatment of congestive heart failure, ACE inhibitors may be useful
together with the peptide herein by reducing systemic vascular resistance
and relieving circulatory congestion. The ACE inhibitors include but are
not limited to those designated by the trademarks Accupril.RTM. (quinapril),
Altace.RTM. (ramipril), Capoten.RTM. (captopril), Lotensin.RTM. (benazepril),
Monopril.RTM. (osinopril), Prinivil.RTM. (lisinopril), Vasotec.RTM. (enalapril),
and Zestril.RTM. (lisinopril). One example of an ACE inhibitor is that
sold under the trademark Capoten.RTM.. Generically referred to as
captopril, this ACE inhibitor is designated chemically as
1-[(2S)-3-mercapto-2-methylpropionyl]-L-proline.
For renal disorders, the peptide may be suitably administered with a
renally-active molecule that promotes reabsorption and retention of
electrolytes such as, e.g., atrial natriuretic peptide (ANP), ANP analogs,
or any variants thereof with or without receptor activity, urodilatin,
human B-type natriuretic peptide (BNP), angiotensin receptor antagonist,
vasopressin and its analogs, and endothelin antagonists such as antibodies
or peptide antagonists. One example is BQ-123 (Ihara et al., Life Science,
50: 247-250 (1992); JP 51-94254A published Aug. 3, 1993; Webb et al.,
Biochem. Biophys. Res. Comm., 185: 887-892 (1992)), a cyclic pentapeptide
that is a potent and specific blocker of endothelin A receptors and blocks
only the hypertrophic activity induced by endothelin-1, not CT-1, mouse
LIF, or phenylephrine. Another example is the parent compound to BQ-123
described by Ihara et al., Biochim. Biophys. Res. Comm., 178: 132-137
(1991). Further examples include those described in EP 647,236; EP
647,449; EP 633,259 (phenyl-sulfonyl amino-pyrimidine derivatives); EP
601,386 (sulfonamide compounds); U.S. Pat. No. 5,292,740 (phenylsulfonamidopyrimidines);
and U.S. Pat. No. 5,270,313 (phenyl-sulfonyl-aminopyrimidine derivatives).
In addition, angiotensin-converting enzyme (ACE) inhibitors may be
beneficial in conjunction with the IGF-I treatment of renal disorders.
In addition, other means of manipulating IGF status, such as regimens of
diet or exercise, are also considered to be combination treatments as part
of this invention. For example, one may administer the peptide to the
mammal along with a high-calorie diet or food such as ENSURE.TM. without
or in conjunction with nutrient supplements such as ketoacid supplements.
The invention herein also contemplates using gene therapy for treating a
mammal, using nucleic acid encoding the peptide. Generally, gene therapy
is used to increase (or overexpress) IGF levels in the mammal. Nucleic
acids which encode the peptide can be used for this purpose. Once the
amino acid sequence is known, one can generate several nucleic acid
molecules using the degeneracy of the genetic code, and select which to
use for gene therapy.
There are two major approaches to getting the nucleic acid (optionally
contained in a vector) into the patient's cells for purposes of gene
therapy: in vivo and ex vivo. For in vivo delivery, the nucleic acid is
injected directly into the patient, usually at the site where the peptide
is required. For ex vivo treatment, the patient's cells are removed, the
nucleic acid is introduced into these isolated cells and the modified
cells are administered to the patient either directly or, for example,
encapsulated within porous membranes which are implanted into the patient.
See, e.g. U.S. Pat. Nos. 4,892,538 and 5,283,187.
There are a variety of techniques available for introducing nucleic acids
into viable cells. The techniques vary depending upon whether the nucleic
acid is transferred into cultured cells in vitro, or in vivo in the cells
of the intended host. Techniques suitable for the transfer of nucleic acid
into mammalian cells in vitro include the use of liposomes,
electroporation, microinjection, cell fusion, DEAE-dextran, the calcium
phosphate precipitation method, etc. A commonly used vector for ex vivo
delivery of the gene is a retrovirus. The currently preferred in vivo
nucleic acid transfer techniques include transfection with viral vectors
(such as adenovirus, Herpes simplex I virus, or adeno-associated virus)
and lipid-based systems (useful lipids for lipid-mediated transfer of the
gene are DOTMA, DOPE and DC-Chol, for example). In some situations it is
desirable to provide the nucleic acid source with an agent that targets
the target cells, such as an antibody specific for a cell surface membrane
protein or the target cell, a ligand for a receptor on the target cell,
etc. Where liposomes are employed, proteins which bind to a cell surface
membrane protein associated with endocytosis may be used for targeting
and/or to facilitate uptake, e.g., capsid proteins or fragments thereof
tropic for a particular cell type, antibodies for proteins which undergo
internalization in cycling, and proteins that target intracellular
localization and enhance intracellular half-life. The technique of
receptor-mediated endocytosis is described, for example, by Wu et al., J.
Biol. Chem., 262: 4429-4432 (1987); and Wagner et al., Proc. Natl. Acad.
Sci. USA, 87: 3410-3414 (1990). For review of the currently known gene
marking and gene therapy protocols, see Anderson et al., Science. 256:
808-813 (1992). See also WO 93/25673 and the references cited therein.
Kits are also contemplated for this invention. A typical kit would
comprise a container, preferably a vial, for the peptide formulation
comprising peptide in a pharmaceutically acceptable buffer and
instructions, such as a product insert or label, directing the user to
utilize the pharmaceutical formulation for treating a disorder
characterized by dysregulation of the GH/IGF axis in a mammal. The kit
optionally includes a container, preferably a vial, for a combination
molecule, such as for renal failure a renally-active molecule.
Claim 1 of 7 Claims
1. A method for treating a disorder in a
mammal, said disorder characterized by increased levels of insulin-like
growth factor binding protein 1 (IGFBP-1) relative to IGFBP-1 levels in a
mammal without said disorder, said method comprising administering to the
mammal an effective amount of an insulin-like growth factor I (IGF-I)
variant, wherein said IGF-I variant comprises an alanine, a glycine, or a
serine substitution of the amino acid residue at position 16, 25, or 49 of
native sequence human IGF-I, or an alanine, a glycine, or a serine
substitution of the amino acid residues at positions 3 and 49 of
native-sequence human IGF-I.
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