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Title:
Tumor antigen protein SART-3 and tumor antigen peptides thereof
United States Patent: 8,097,697
Issued: January 17, 2012
Inventors: Itoh; Kyogo (Miyaki-gun,
JP), Nakao; Masanobu (Okawa, JP)
Assignee: Green Peptide
Co., Ltd. (Kurume-shi, JP)
Appl. No.: 13/109,976
Filed: May 17, 2011
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Training Courses -- Pharm/Biotech/etc.
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Abstract
A novel tumor antigen protein and gene
therefor, tumor antigen peptides derived from said tumor antigen protein
or derivatives thereof as well as medicaments, prophylactics, or
diagnostics for tumors using such tumor substances in vitro or in vitro
are provided.
Description of the
Invention
TECHNICAL FIELD
The present invention relates to the novel tumor antigen protein, and
tumor antigen peptides thereof. More particularly, it relates to the novel
tumor antigen protein and the gene thereof, tumor antigen peptides derived
from the tumor antigen protein, and derivatives of their substances, as
well as to medicaments, prophylactics, or diagnostics for tumors that
utilize in vivo or in vitro such tumor antigen protein, genes, tumor
antigen peptides, or derivatives thereof.
BACKGROUND ART
It is known that immune system, particularly T cells, plays an important
role in tumor elimination by a living body. Indeed, infiltration of
lymphocytes exhibiting cytotoxic effects on tumor cells in human tumor
foci has been observed (Arch. Surg., 126:200, 1990), and cytotoxic T
lymphocytes (CTLs) recognizing autologous tumor cells have been isolated
from melanomas without great difficulties (e.g., Immunol. Today, 8:385,
1987; J. Immunol., 138:989, 1987; and Int. J. Cancer, 52:52, 1992). In
addition, the results of clinical treatment of melanomas by transfer of
the CTLs recognizing autologous tumor cells also suggest the importance of
T cells in tumor elimination (J. Natl. Cancer. Inst., 86:1159, 1994).
Although it had long been unknown about target molecules for CTLs
attacking autologous tumor cells, the recent advance in immunology and
molecular biology gradually began elucidating such target molecules.
Specifically, it has been found that CTL, using the T cell receptors (TCRs),
recognizes a complex between a peptide, called tumor antigen peptide, and
a major histocompatibility complex class I antigen (MHC class I antigen,
and in the case of human, referred to as HLA antigen), and thereby attacks
autologous tumor cells.
Tumor antigen peptides are generated by degradation of tumor antigen
proteins, which are proteins specific for tumors, in cells with
proteasomes, which proteins are intracellularly synthesized. The tumor
antigen peptides thus generated bind to MHC class I antigens (HLA
antigens) in endoplasmic reticulum to form complexes, and the complexes
are transported to the cell surface to be presented as an antigen. A
tumor-specific CTL recognizes the complex presented as an antigen, and
exhibits anti-tumor effects through its cytotoxic action or production of
lymphokines. As a consequence of elucidation of a series of the actions,
it has become possible to treat tumors by using tumor antigen proteins or
tumor antigen peptides as so-called cancer vaccines to enhance
tumor-specific CTLs in the body of a tumor patient.
As a tumor antigen protein, T. Boon et al. identified a protein named MAGE
from human melanoma cells for the first time in 1991 (Science, 254:1643,
1991). Subsequently, several additional tumor antigen proteins have been
identified mainly from melanoma cells. Examples of melanoma antigens that
have been identified are melanosomal proteins such as a melanocytic
tissue-specific protein, gp100 (J. Exp. Med., 179:1005, 1994), MART-1
(Proc. Natl. Acad. Sci. USA, 91:3515, 1994), and tyrosinase (J. Exp. Med.,
178:489, 1993); MEGE-related proteins that are expressed not only on
melanomas but also on various cancer cells and normal testicular cells (J.
Exp. Med., 179:921, 1994); .beta.-catenin having a tumor-specific amino
acid mutation (J. Exp. Med., 183:1185, 1996); and CDK4 (Science, 269:1281,
1995). Tumor antigen proteins other than those from melanomas have also
been identified, including products of oncogenes such as HER2-neu (J. Exp.
Med., 181:2109, 1995) and p53 (variant) (Proc. Natl. Acad. Sci. USA,
93:14704, 1996); tumor markers such as CEA (J. Natl. Cancer Inst., 87:982,
1995) and PSA (J. Natl. Cancer Inst., 89:293, 1997); and viral proteins
such as HPV (J. Immunol., 154:5934, 1995) and EBV (Int. Immunol., 7:653,
1995). Detailed descriptions of these substances can be found in published
reviews (e.g. Immunol. Today, 18:267, 1997; J. Exp. Med., 183:725, 1996;
and Curr. Opin. Immunol., 8:628, 1996).
In applications of a tumor antigen protein or a tumor antigen peptide to
treatment or diagnosis of tumors, it is important to identify a tumor
antigen that can be widely applied to squamous cell carcinomas such as
esophageal and lung cancers that occur at a much higher incidence compared
to melanomas. In this relation, the present inventors conducted cloning of
a gene encoding a novel tumor antigen protein from squamous cell carcinoma
cells derived from esophageal cancer, and identified for the first time
from the tumor cell other than melanomas several tumor antigen peptides
that are bound to and presented on HLA antigens of which HLA types are
HLA-A24 or HLA-A26 (J. Exp. Med., 187:277, 1998; International Patent
Publication WO 97/46676).
When these tumor antigen peptides are clinically applied in practice, it
may be desirable to use two or more different tumor antigen peptides
rather than to use merely one peptide. That is to say, taking into
consideration the facts that all cancer cells do not express an identical
tumor antigen in common and that two or more different tumor antigen
peptides are presented on a single cancer cell, a treatment using two or
more different tumor antigen peptides is believed to be more effective.
Indeed, in the case of melanoma, development of cocktail formulations
comprising two or more peptides has been attempted, since a single peptide
derived from a tumor antigen failed to exhibit adequate effects (Int. J.
Cancer, 66:162, 1996; and Int. J. Cancer, 67:54, 1996). Under such
circumstances, it is being required to identify novel tumor antigen
proteins and tumor antigen peptides that can be widely applied to squamous
cell carcinomas that occur at a higher incidence.
DISCLOSURE OF THE INVENTION
The present invention aims to provide the novel tumor antigen protein and
tumor antigen peptides. Particularly, it aims to provide the novel tumor
antigen protein and gene thereof, tumor antigen peptides derived from the
tumor antigen protein, and derivatives of their substances, as well as to
medicaments, prophylactics, or diagnostics for tumors that utilize in vivo
or in vitro such tumor antigen protein, genes, tumor antigen peptides, or
derivatives thereof. The tumor antigen peptides of the present invention
include a tumor antigen peptide that is bound to and presented on HLA-A24
that is the HLA antigen carried by about 60% of the Japanese people and a
tumor antigen peptide that is bound to and presented on HLA-A2 carried by
about 40% of the Japanese and the Caucasians, and, therefore, it can be
applied to many patients. Further, the tumor antigen peptides of the
present invention may be also applied to squamous cell carcinomas or the
like that is recognized most frequently as an etiologic cancer in human,
and are expected to have utilities as novel anti-tumor medicaments. It is
known that the squamous cell carcinoma on esophageal or lung cancer among
the squamous cell carcinomas tends to relatively exhibit a resistance to
the current chemotherapy and radiotherapy. In this respect, the
development of the tumor antigen peptides of the present invention is
desired.
In order to obtain novel tumor antigen protein and tumor antigen peptides,
the present inventors made the following attempts.
First of all, the present inventors prepared a cDNA library from
esophageal cancer cell line KE-4 (FERM BP-5955), and doubly transfected
fibroblast cell line VA-13 (RIKEN CELL BANK, The Institute of Physical and
Chemical Research) with a recombinant plasmid of the library and a
recombinant plasmid containing cDNA of HLA-A2402 (one type of HLA-A24).
The resulting transfectants were treated with KE-4CTL (FERM BP-5954) that
is directed to KE-4, and the amount of produced IFN-.gamma. was measured
to determine whether or not KE-4CTL was activated. As a result of such
extensive screening repeatedly conducted, the present inventors finally
succeeded in cloning one gene encoding a tumor antigen protein although we
did not assure that the screening resulted in a novel and useful tumor
antigen protein. The inventors named the tumor antigen protein encoded by
the gene "SART-3". Comparing the base sequence of SART-3 with known
sequences revealed that said base sequence of SART-3 was a novel base
sequence that is different from the KIAA0156 gene registered as Accession
No. D63879 at GenBank database in terms of a single base, which function
has not been demonstrated.
Further, the present inventors identified tumor antigen peptide portions
residing in the amino acid sequence of SART-3 that are bound to and
presented on HLA-A24 and HLA-A2, and demonstrated that such peptides have
activity as a tumor antigen peptide.
The present invention has been completed on the basis of the findings as
described above.
Thus, the present invention relates to:
(1) A DNA encoding a protein consisting of an amino acid sequence shown in
SEQ ID NO: 2, or a protein variant consisting of an amino acid sequence
containing substitution, deletion, and/or addition of one or more amino
acid residues of SEQ ID NO: 2, provided that the protein and the protein
variant give rise to tumor antigen peptides that are capable of binding to
an HLA antigen and being recognized by cytotoxic T lymphocytes;
(2) A DNA consisting of a base sequence shown in SEQ ID NO: 1, or a DNA
variant that hybridizes to the DNA under a stringent condition, provided
that a protein produced and expressed by the DNA or the DNA variant gives
rise to tumor antigen peptides that are capable of binding to an HLA
antigen and being recognized by cytotoxic T lymphocytes;
(3) An expression plasmid that contains the DNA of the above (1) or (2);
(4) A transformant that is transformed with the expression plasmid of the
above (3);
(5) A process for producing a recombinant protein, which comprises
culturing the transformant of the above (4), and recovering the expressed
recombinant protein;
(6) A tumor antigen protein that is encoded by the DNA of the above (1) or
(2), or is produced by the process of the above (5);
(7) A pharmaceutical composition that comprises as an active ingredient
the DNA of the above (1) or (2), or the protein of the above (6);
(8) A pharmaceutical composition for treating or preventing tumors, which
comprises as an active ingredient the DNA of the above (1) or (2), or the
protein of the above (6);
(9) A tumor antigen peptide that is a partial peptide derived from the
protein of the above (6), and that is capable of binding to an HLA antigen
and being recognized by cytotoxic T lymphocytes, or a derivative thereof
having the functionally equivalent properties;
(10) The tumor antigen peptide of the above (9) wherein the HLA antigen is
HLA-A24 or HLA-A2, or a derivative thereof having the functionally
equivalent properties;
(11) The tumor antigen peptide of the above (10), which comprises a
sequence selected from all or part of an amino acid sequence shown in any
one of SEQ ID NOs: 3-52, or a derivative thereof having the functionally
equivalent properties;
(12) The tumor antigen peptide of the above (11), which comprises a
sequence selected from all or part of an amino acid sequence shown in any
one of SEQ ID NOs: 3-9 and 25-29, or a derivative thereof having the
functionally equivalent properties;
(13) The tumor antigen peptide derivative of the above (11), which
comprises a sequence selected from all or part of an amino acid sequence
wherein the amino acid residue at position 2 and/or the C-terminus in the
amino acid sequence shown in any one of SEQ ID NOs: 3-52 is substituted by
another amino acid residue;
(14) The tumor antigen peptide derivative of the above (13), which
comprises a sequence selected from all or part of an amino acid sequence
wherein the amino acid residue at position 2 and/or the C-terminus in the
amino acid sequence shown in any one of SEQ ID NOs: 3-9 and 25-29 is
substituted by another amino acid residue;
(15) The tumor antigen peptide derivative of the above (13), which
comprises a sequence selected from all or part of an amino acid sequence
wherein the amino acid residue at position 2 in the amino acid sequence
shown in any one of SEQ ID NOs: 3-24 is substituted by tyrosine,
phenylalanine, methionine, or tryptophan, and/or the amino acid residue at
the C-terminus is substituted by phenylalanine, leucine, isoleucine,
tryptophan, or methionine;
(16) The tumor antigen peptide derivative of the above (13), which
comprises a sequence selected from all or part of an amino acid sequence
wherein the amino acid residue at position 2 in the amino acid sequence
shown in any one of SEQ ID NOs: 25-52 is substituted by leucine,
methionine, valine, isoleucine, or glutamine, and/or the amino acid
residue at the C-terminus is substituted by valine or leucine;
(17) The tumor antigen peptide derivative of the above (14), which
comprises a sequence selected from all or part of the amino acid sequence
shown in any one of SEQ ID NOs: 53-64;
(18) A pharmaceutical composition for treating or preventing tumors, which
comprises as an active ingredient at least one of substances selected from
the tumor antigen peptides and derivatives thereof according to any one of
the above (9) to (17);
(19) A recombinant DNA comprising at least one of DNAs that encode the
tumor antigen peptides or derivatives thereof according to any one of the
above (9) to (17);
(20) A recombinant polypeptide obtainable by expressing the recombinant
DNA of the above (19);
(21) A pharmaceutical composition for treating or preventing tumors, which
comprises as an active ingredient the recombinant DNA of the above (19) or
the recombinant polypeptide of the above (20);
(22) An antibody that specifically binds to any one of the tumor antigen
protein of the above (6), and the tumor antigen peptide or the derivative
thereof according to any one of the above (9) to (17);
(23) An antigen-presenting cell wherein a complex between an HLA antigen
and the tumor antigen peptide or the derivative thereof according to any
one of the above (9) to (17) is presented on the surface of a cell having
antigen-presenting ability, which cell is isolated from a tumor patient;
(24) An antigen-presenting cell on which a complex between an HLA antigen
and a tumor antigen peptide or a derivative thereof is presented, said
antigen-presenting cell being obtainable by allowing a cell having
antigen-presenting ability isolated from a tumor patient to be
incorporated with the DNA of the above (1) or (2), the tumor antigen
protein of the above (6), the recombinant DNA of the above (19), or the
recombinant polypeptide of the above (20);
(25) A pharmaceutical composition for treating tumors, which comprises as
an active ingredient the antigen-presenting cell of the above (23) or
(24);
(26) A cytotoxic T lymphocyte that specifically recognizes a complex
between an HLA antigen and the tumor antigen peptide or derivative thereof
according to any one of the above (9) to (17);
(27) A cytotoxic T lymphocyte that specifically recognizes a complex
between an HLA antigen and a tumor antigen peptide or derivative thereof,
which complex is presented on the antigen-presenting cell of the above
(23) or (24);
(28) A pharmaceutical composition for treating tumors, which comprises as
an active ingredient the cytotoxic T lymphocyte of the above (26) or (27);
(29) A diagnostic agent for tumors, which comprises the tumor antigen
peptide or derivative thereof according to any one of the above (9) to
(17), the protein of the above (6), or the recombinant polypeptide of the
above (20);
(30) Cytotoxic T lymphocyte OK-CTL, of which the deposit number is FERM
BP-6818; and
(31) A method for identifying tumor antigen proteins or tumor antigen
peptides, which comprises using OK-CTL of the above (30).
The DNAs of the present invention encode novel tumor antigen proteins, and
specific examples of the DNAs include a DNA encoding SART-3 protein
consisting of an amino acid sequence shown in SEQ ID NO: 2, or a protein
variant consisting of an amino acid sequence containing substitution,
deletion, and/or addition of one or more amino acid residues of the amino
acid sequence of SART-3, provided that the protein and the protein variant
give rise to tumor antigen peptides that are capable of binding to an HLA
antigen and being recognized by cytotoxic T lymphocytes; or a DNA of
SART-3 consisting of a base sequence shown in SEQ ID NO: 1, or a DNA
variant that hybridizes to the DNA of SART-3 under a stringent condition,
provided that a protein produced and expressed by the DNA and the DNA
variant gives rise to tumor antigen peptides that are capable of binding
to an HLA antigen and being recognized by cytotoxic T lymphocytes. The DNA
of the present invention is further described hereinafter following the
order established above.
1) DNA Encoding SART-3
"DNA encoding a protein consisting of an amino acid sequence shown in SEQ
ID NO: 2" and "a DNA consisting of a base sequence shown in SEQ ID NO: 1"
among the DNAs described above refers to a DNA encoding tumor antigen
protein SART-3 of the present invention. The DNA may be cloned in
accordance with the process described in Examples hereinafter. Further,
the cloning of the DNA may be also conducted by, for example, screening a
cDNA library derived from cell lines such as esophageal cancer cell line
KE-4 (FERM BP-5955) using an appropriate portion of the base sequence
disclosed in GenBank Accession No. D63879 or shown in SEQ ID NO: 1 in the
present specification as a probe for hybridization or a PCR primer. It
would be ready for those skilled in the art to achieve such cloning in
accordance with Molecular Cloning 2nd Edt. Cold Spring Harbor Laboratory
Press (1989), for example.
2) DNA Encoding a Modified Protein of SART-3 or Allelic Variant Thereof
"DNA encoding a protein variant consisting of an amino acid sequence
containing substitution, deletion, and/or addition of one or more amino
acid residues of the amino acid sequence of SART-3" among the DNAs
described above refers to a DNA that encodes a so-called modified protein,
which is artificially prepared, or proteins such as an allelic variant
existing in a living body. The DNA encoding such protein variants may be
prepared by diverse methods such as site-directed mutagenesis and PCR
technique that are described in Molecular Cloning: A Laboratory Manual 2nd
Edt. vols. 1-3, Cold Spring Harbor Laboratory Press (1989). Number of
amino acid residue to be substituted, deleted and/or added should be in a
range that enables the substitution, deletion, and/or addition in
accordance with the well-known methods such as site-directed mutagenesis
as shown above.
3) DNA that Hybridizes to the DNA of SART-3 Under a Stringent Condition
"DNA variant that hybridizes to the DNA of SART-3 under a stringent
condition" among the DNAs described above refers to a DNA that hybridizes
to human SART-3 cDNA consisting of the base sequence shown in SEQ ID NO: 1
under a stringent condition, including SART-3 DNAs from all of vertebrate
such as rat and mouse, and DNAs encoding a partial protein of SART-3.
The term "stringent condition" refers to a condition such that a
hybridization is conducted in a solution containing 6.times.SSC
(20.times.SSC represents 333 mM Sodium citrate, 333 mM NaCl), 0.5% SDS and
50% formamide at 42.degree. C., and then the hybridized products are
washed in a solution of 0.1.times.SSC, 0.5% SDS at 68.degree. C., or to
conditions as described in Nakayama, et al., Bio-Jikken-Illustrated, vol.
2, "Idenshi-Kaiseki-No-Kiso (A Basis for Gene Analysis)", pp. 148-151,
Shujunsha, 1995.
The DNA variants are cloned by diverse processes such as hybridization to
the DNA shown in SEQ ID NO: 1. Particular procedures for the processes
such as production of cDNA library, hybridization, selection of positive
colony, and determination of base sequence are well-known, and may be
conducted consulting Molecular Cloning as shown above. Probes useful for
the hybridization includes a DNA comprising a base sequence described in
SEQ ID NO: 1.
Among the DNAs as described above 1) to 3), a DNA having an ability to
generate a tumor antigen peptide that is capable of binding to an HLA
antigen and being recognized by CTLs, and that is derived from a protein
produced by the expression of the DNA via intracellular degradation,
constitutes the DNA encoding tumor antigen protein of the present
invention, namely, the DNA of the present invention. Particularly, the
DNAs of the present invention are those that generate such peptide
fragment as a partial peptide consisting of a part of an amino acid
sequence of a protein produced by the expression of said DNA, said peptide
being capable of binding to an HLA antigen, and inducing production of
cytotoxic actions and cytokines from CTLs specific for the complex between
the peptide and the HLA antigen that bind to the complex presenting on the
cell surface.
Determination whether or not a candidate DNA may be a DNA encoding a tumor
antigen protein may be achieved for example by the following method.
An expression plasmid containing a candidate DNA and an expression plasmid
containing a DNA encoding an HLA antigen are doubly transfected into
fibroblast VA-13 (RIKEN CELL BANK, The Institute of Physical and Chemical
Research) or COS-7 (ATCC CRL 1651) derived from African green monkey
kidney. The transfection may be achieved, for example, by the Lipofectin
method using Lipofectamine reagent (GIBCO BRL). Subsequently, a
tumor-responsive CTL that is restricted to the particular HLA antigen used
is added to act on the transfectants, and then the amount of various
cytokines (for example, IFN-.gamma.) produced by said CTL in response to
the transfectants may be measured, for example, by ELISA to determine
whether or not the candidate DNA is a DNA of the present invention. In
this context, since SART-3 contains HLA-A24- or HLA-A2-restricted tumor
antigen peptide portions, HLA-A24 cDNA (Cancer Res., 55:4248-4252 (1995);
Genbank Accession No. M64740) and HLA-A2 cDNA (Genbank Accession No.
M84379) may be used as the above DNA encoding the HLA antigen, whereas
those CTLs that are prepared from human peripheral blood lymphocytes as
well as HLA-A24-restricted CTLs such as KE-4CTL (FERM BP-5954) or
HLA-A2-restricted CTLs such as OK-CTL (FERM BP-6818) may be used as the
above CTL.
The DNA of the present invention as described above can be used as an
active ingredient in a medicament or a pharmaceutical composition. In
accordance with "pharmaceutical composition" that comprises the DNA of the
present invention as an active ingredient, administration of the DNA of
the present invention to a tumor patient makes treatment or prevention of
tumors possible.
By administering a DNA of the present invention incorporated into an
expression vector to a tumor patient according to the following method,
the tumor antigen protein is highly expressed in antigen-presenting cells.
Tumor antigen peptides that are subsequently generated by intracellular
degradation bind to HLA antigen to form complexes, and the complexes are
densely presented on the antigen-presenting cell surface. As a result,
CTLs specific for tumors efficiently proliferate in the body, and destroy
tumor cells. In this way, treatment or prevention of tumors is achieved.
Administration and introduction of the DNA of the present invention into
cells may be achieved using viral vectors or according to any one of other
procedures (Nikkei-Science, April, 1994, pp. 20-45; Gekkan-Yakuji, 36(1),
23-48 (1994); Jikken-Igaku-Zokan, 12(15), 1994, and references cited
therein).
Examples of the methods using viral vectors include methods in which DNA
of the present invention is incorporated into DNA or RNA virus such as
retrovirus, adenovirus, adeno-associated virus, herpesvirus, vaccinia
virus, poxvirus, poliovirus, or Sindbis virus, and introduced into cells.
Among these methods, those using retrovirus, adenovirus, adeno-associated
virus, or vaccinia virus are particularly preferred.
Other methods include those in which expression plasmids are directly
injected intramuscularly (DNA vaccination), liposome method, Lipofectin
method, microinjection, calcium phosphate method, and electroporation, and
DNA vaccination and liposome method is particularly preferred.
In order to allow a DNA of the present invention to act as a medicament in
practice, there are an in vivo method in which DNA is directly introduced
into the body, and an ex vivo method in which certain cells are removed
from human, and after introducing DNA into said cells extracorporeally,
the cells are reintroduced into the body (Nikkei-Science, April, 1994, pp.
20-45; Gekkan-Yakuji, 36(1), 23-48 (1994); Jikkenn-Igaku-Zokan, 12(15),
1994; and references cited therein). An in vivo method is more preferred.
In case of in vivo methods, the DNA may be administered by any appropriate
route depending on the disease and symptoms to be treated and other
factors. For example, it may be administered via intravenous,
intraarterial, subcutaneous, intracutaneous, intramuscular route, or the
like. In the case of in vivo methods, the compositions may be administered
in various dosage forms such as solution, and are typically formulated,
for example, in the form of injection containing DNA of the present
invention as an active ingredient, to which conventional carriers may also
be added, if necessary. If a DNA of the present invention is included in
liposomes or membrane-fused liposomes (such as Sendai virus (HVJ)-liposomes),
the compositions may be in the form of liposome formulations such as
suspension, frozen drug, centrifugally-concentrated frozen drug, or the
like.
Although the amount of a DNA of the present invention in such formulations
may vary depending on the disease to be treated, the age and the weight of
the patient, and the like, it is typical to administer 0.0001 mg-100 mg,
preferably 0.001 mg-10 mg, of a DNA of the present invention every several
days to every several months.
In the invention, the term "protein" refers to a protein encoded by the
various DNAs of the present invention as described above, which has an
ability as tumor antigen protein to give rise to tumor antigen peptides
via intracellular degradation that are capable of binding to an HLA
antigen and being recognized by CTLs. Specific examples of the proteins
include SART-3 comprising an amino acid sequence shown in SEQ ID NO: 2.
The proteins of the present invention may be produced in large scale using
the DNA of the present invention as described above.
Production of tumor antigen proteins by expressing the DNA of the present
invention may be achieved in accordance with many publications and
references such as "Molecular Cloning" mentioned above. Particularly, an
expression plasmid that replicates and functions in host cells is
constructed by incorporating a DNA of the present invention into an
appropriate expression vector (e.g., pSV-SPORT1, pCR3). Subsequently, the
expression plasmid is introduced into appropriate host cells to obtain
transformants. Examples of host cells include those of prokaryotes such as
Escherichia coli, unicellular eukaryotes such as yeast, and cells derived
from multicellular eukaryotes such as insects or animals. Gene transfer
into host cells may be achieved by conventional methods such as calcium
phosphate method, DEAE-dextran method, electric pulse method, Lipofectin
method, or the like. Desired proteins are produced by culturing the
transformants in appropriate medium. The tumor antigen proteins thus
obtained may be isolated and purified according to standard biochemical
procedures.
It can be demonstrated whether or not a tumor antigen protein of the
present invention has certain activity by, as described above, expressing
the DNA of the present invention within cells to produce the protein of
the present invention, and determining if the peptide fragment generated
by intracellular degradation of said protein has the activity as a tumor
antigen peptide. In case of using the tumor antigen protein as it is, the
measurement for the activity can be achieved by allowing the protein to be
incorporated into the phagocytes such as macrophage so as to generate
peptide fragments in cells, and then contacting CTLs to complexes between
the peptide fragments and HLA antigen, followed by measuring the amount of
various cytokines (for example, IFN-.gamma.) produced by the CTLs in
response to the complexes.
The protein of the present invention as described above can be also used
as an active ingredient in medicament or a pharmaceutical composition. In
accordance with "pharmaceutical composition" that comprises the protein of
the present invention as an active ingredient, administration of the
protein of the present invention makes treatment or prevention of tumors
possible, for example. When administered to a tumor patient, the protein
of the present invention is introduced into antigen-presenting cells.
Tumor antigen peptides that are subsequently generated by intracellular
degradation bind to HLA antigen to form complexes, and the complexes are
presented on the cell surface. CTLs specific for the complex efficiently
proliferate in the body, and destroy tumor cells. In this way, treatment
or prevention of tumors is achieved.
Pharmaceutical compositions comprising the tumor antigen protein of the
present invention may be administered together with an adjuvant in order
to effectively establish the cellular immunity, or may be administered in
a particulate dosage form. For such purpose, those adjuvants described in
the literature (Clin. Microbiol. Rev., 7:277-289, 1994) are applicable. In
addition, liposomal preparations, particulate preparations in which the
ingredient is bound to beads having a diameter of several .mu.m, or
preparations in which the ingredient is attached to lipids are also
possible. Administration may be achieved, for example, intradermally,
hypodermically, or by intravenous injection. Although the amount of a
tumor antigen protein of the present invention in such formulations may
vary depending on the disease to be treated, the age and the weight of the
patient, and the like, it is typical to administer 0.0001 mg-1000 mg,
preferably 0.001 mg-100 mg, more preferably 0.01 mg-10 mg of a tumor
antigen protein of the present invention every several days to every
several months.
In the present invention, the term "tumor antigen peptide" refers to a
partial peptide that consists of a part of the tumor antigen protein of
the present invention and is capable of binding to an HLA antigen and
being recognized by CTL. Accordingly, any peptide falls within the scope
of the tumor antigen peptide of the present invention, regardless of its
length or its position in the amino acid sequence of the present protein,
as long as the peptide consists of a part of the amino acid sequence of
the present protein and a complex between said peptide and an HLA antigen
is capable of being recognized by CTL. Such tumor antigen peptides of the
present invention can be identified by synthesizing a candidate peptide
which consists of a part of the tumor antigen protein of the present
invention and conducting an assay for determining whether or not a complex
between the candidate peptide and an HLA antigen is recognized by CTL, in
other words, whether or not the candidate peptide has the activity as a
tumor antigen peptide.
In this connection, synthesis of peptides may be conducted according to a
method usually used in peptide chemistry. Examples of such known methods
are those described in the literatures including "Peptide Synthesis",
Interscience, New York, 1966; "The Proteins", vol. 2, Academic Press Inc.,
New York, 1976; "Pepuchido-Gosei", Maruzen Co. Ltd., 1975; "Pepuchido-Gosei-no-Kiso-to-Jikkenn",
Maruzen Co. Ltd., 1985; and "Iyakuhin-no-Kaihatu, Zoku, vol. 14,
Peputido-Gosei", Hirokawa Shoten, 1991.
Next, methods for identifying tumor antigen peptides of the present
invention are further described below.
The respective sequence rules (motifs) of antigen peptides that are bound
to and presented on the following HLA types have been known; HLA-A1,
-A0201, -A0204, -A0205, -A0206, -A0207, -A11, -A24, -A31, -A6801, -B7,
-B8, -B2705, -B37, -Cw0401, and -Cw0602 (see, e.g., Immunogenetics,
41:178, 1995). Regarding the motif for HLA-A24, for example, it is known
that in the sequence of peptides consisting of 8 to 11 amino acids, the
amino acid at position 2 is tyrosine, phenylalanine, methionine, or
tryptophan, and the amino acid at the C-terminus is phenylalanine, leucine,
isoleucine, tryptophan, or methionine (J. Immunol., 152:3913, 1994;
Immunogenetics, 41:178, 1995; J. Immunol., 155:4307, 1994). Likewise, the
motifs shown in the following Table 1 (see Original Patent) are known for
HLA-A2 (Immunogenetics, 41:178, 1995; J. Immunol., 155:4749, 1995).
In addition, any peptide sequence expected to be capable of binding to HLA
antigens may be searched on the internet using the BIMAS software of NIH.
By analysis of antigen peptides bound to various HLA molecules, it has
been shown that the length of the peptides is usually about 8 to 14 amino
acids long, although antigen peptides of 14 or more amino acids in length
are also observed for HLA-DR, -DP, and -DQ (Immunogenetics, 41:178, 1995).
It is easy to select peptide portions involved in such motifs from the
amino acid sequence of the protein of the present invention. Such peptide
portions involved in the above motif structures can be easily selected by
inspecting the amino acid sequence of tumor antigen protein SART-3 (SEQ ID
NO: 2). Further, it is easy to select any sequence expected to be capable
of binding to HLA antigens by search on internet as shown above. Tumor
antigen peptides of the present invention can be identified by
synthesizing candidate peptides thus selected according to the method
described above and conducting an assay for determining whether or not a
complex between the candidate peptide and an HLA antigen is recognized by
CTL, in other words, whether or not a candidate peptide has an activity as
a tumor antigen peptide.
A specific example of method for identifying tumor antigen peptides of the
present invention is a method described in J. Immunol., 154:2257, 1995.
Specifically, peripheral blood lymphocytes are isolated from a human who
is positive for the type of an HLA antigen that is expected to present the
candidate peptide, and are stimulated in vitro by adding the candidate
peptide. If the candidate induces CTL that specifically recognizes the HLA-antigen-presenting
cells pulsed with the candidate peptide, it is indicated that the
particular candidate peptide may function as a tumor antigen peptide. In
this connection, the presence or absence of CTL induction can be detected,
for example, by measuring the amount of various cytokines (for example,
IFN-.gamma.) produced by CTLs in response to the antigen
peptide-presenting cells using, for example, an ELISA method.
Alternatively, a method in which the cytotoxicity of CTLs against antigen
peptide-presenting cells labeled with .sup.51Cr is measured (.sup.51Cr
release assay, Int. J. Cancer, 58:317, 1994) may also be used for such
detection.
Furthermore, the above detection can also be achieved as follows. An
expression plasmid expressing a cDNA for the type of an HLA antigen that
is expected to present the candidate peptide is incorporated into, for
example, COS-7 cells (ATCC No. CRL1651) or VA-13 cells (RIKEN CELL BANK,
The Institute of Physical and Chemical Research), and the resultant cells
are pulsed with the candidate peptide. The cells are then reacted with the
CTLs that are restricted to the type of the HLA antigen expected to
present the candidate peptide as described above, and the amount of
various cytokines (for example, IFN-.gamma.) produced by said CTLs is
measured (J. Exp. Med., 187:277, 1998).
SART-3 contains HLA-A24- or HLA-A2-restricted tumor antigen peptide
portions. In order to identify HLA-A24-restricted tumor antigen peptides,
HLA-A24 cDNA (Cancer Res., 55:4248-4252, 1995, Genbank Accession No.
M64740) can be used as a cDNA encoding the HLA antigen, whereas those CTLs
such as KE-4CTL (FERM BP-5954) as well as CTLs that are prepared by
peptide-stimulation of human peripheral blood lymphocytes can be used as
the CTLs described above. Likewise, for HLA-A2-restricted tumor antigen
peptides, identification of such tumor antigen peptides can be achieved
using HLA-A2 cDNA (Genbank Accession No. M84379), and using as the CTLs
described above those CTLs such as OK-CTL (FERM BP-6818) as well as CTLs
that are prepared by peptide-stimulation of human peripheral blood
lymphocytes.
Specific examples of various assays as described above are illustrated in
Examples 4, 6, and 8 hereinafter.
In cases like HLA-A26 wherein a relevant peptide motif is not elucidated,
tumor antigen peptides of the present invention can be identified, for
example, according to the method described in WO 97/46676, which method is
different from that in the above cases wherein the sequence rules (motifs)
have been elucidated, provided that a CTL line recognizing a complex
between HLA-A26 and a tumor antigen peptide is available.
The methods for identifying tumor antigen peptides as described above may
be hereinafter collectively referred to as "assay methods for tumor
antigen peptides".
As described above, it is known that the sequences of tumor antigen
peptides that are bound to and presented on HLA-A24 obey a certain rule
(motif), and in particular, the motif is that, in a sequence of a peptide
consisting of 8 to 11 amino acids, the amino acid at position 2 is
tyrosine, phenylalanine, methionine, or tryptophan, and the amino acid at
the C-terminus is phenylalanine, leucine, isoleucine, tryptophan, or
methionine (J. Immunol., 152:3913, 1994; Immunogenetics, 41: p 178, 1995;
J. Immunol., 155: p 4307, 1994). Likewise, a similar rule (motif) can be
found in the sequences of tumor antigen peptides that are bound to and
presented on HLA-A2, and in particular, the motifs shown in the above
Table 1(see Original Patent) are known (Immunogenetics, 41, p 178,
1995; J. Immunol., 155: p 4749, 1995). As shown above, sequences expected
to be capable of binding to HLA antigens may be further searched on the
Internet using the BIMAS software of NIH.
Accordingly, HLA-A24- and HLA-A2-restricted tumor antigen peptides among
the tumor antigen peptides of the present invention are exemplified by
those tumor antigen peptides that are partial peptides involved in such
motif structures or structures expected to be capable of binding to the
HLAs in the amino acid sequence of SART-3 shown in SEQ ID NO: 2 and that
are capable of binding to respective HLA antigens and being recognized by
CTLs.
Particular examples of HLA-A24-restricted tumor antigen peptides described
above include those tumor antigen peptides that comprise all or part of an
amino acid sequence shown in any one of SEQ ID NOs: 3-24 and that are
capable of binding to an HLA-A24 antigen and being recognized by CTL.
Likewise, particular examples of HLA-A2-restricted tumor antigen peptides
include those tumor antigen peptides that comprise all or part of an amino
acid sequence shown in any one of SEQ ID NOs: 25-52 and that are capable
of binding to an HLA-A2 antigen and being recognized by CTL.
Specifically, examples of tumor antigen peptides of the present invention
include:
1) peptides that consist of an amino acid sequence shown in any one of SEQ
ID NOs: 3-52, and
2) peptides that comprise the full length or a consecutive portion of an
amino acid sequence shown in any one of SEQ ID NOs: 3-52 and that are
elongated in the N-terminal and/or C-terminal direction as compared to
said amino acid sequence, or peptides consisting of a consecutive portion
of an amino acid sequence shown in any one of SEQ ID NOs: 3-52, said
peptides being capable of binding to respective HLA antigens and being
recognized by CTLs. The peptides in the above 2) may be about 8-11 amino
acids in length in view of the fact that they are bound and presented by
respective HLA antigens.
Suitable examples of HLA-A24-restricted tumor antigen peptides of the
present invention include those tumor antigen peptides that comprise all
or part of the amino acid sequence shown in any one of SEQ ID NOs: 3-9 and
that are capable of binding to an HLA-A24 antigen and being recognized by
CTL. Specifically, examples are:
1) peptides that consist of the amino acid sequence shown in any one of
SEQ ID NOs: 3-9, and
2) peptides that comprise the full length or a consecutive portion of the
amino acid sequence shown in any one of SEQ ID NOs: 3-9 and that are
elongated in the N-terminal and/or C-terminal direction as compared to
said amino acid sequence, or peptides that consist of a consecutive
portion of the amino acid sequence shown in any one of SEQ ID NOs: 3-9,
said peptides being capable of binding to HLA-A24 antigens and being
recognized by CTLs. The peptides in the above 2) may be about 8-11 amino
acids in length in view of the fact that they are bound to and presented
on HLA-A24 antigens.
Suitable examples of HLA-A2-restricted tumor antigen peptides of the
present invention include those tumor antigen peptides that comprise all
or part of the amino acid sequence shown in any one of SEQ ID NOs: 25-29
and that are capable of binding to an HLA-A2 antigen and being recognized
by CTL. Specifically, examples are:
1) peptides that consist of the amino acid sequence shown in any one of
SEQ ID NOs: 25-29, and
2) peptides that comprise the full length or a consecutive portion of the
amino acid sequence shown in any one of SEQ ID NOs: 25-29 and that are
elongated in the N-terminal and/or C-terminal direction as compared to
said amino acid sequence, or peptides that consist of a consecutive
portion of the amino acid sequence shown in any one of SEQ ID NOs: 25-29,
said peptides being capable of binding to HLA-A2 antigens and being
recognized by CTLs. The peptides in the above 2) may be about 8-11 amino
acids in length in view of the fact that they are bound to and presented
on HLA-A2 antigens.
In the present invention, the term "derivative having properties
functionally equivalent to those of a tumor antigen peptide" (hereinafter
may be simply referred to as tumor antigen peptide derivative) refers to
an altered peptide, of which the amino acid sequence contains alteration
of one or more, preferably one to several, amino acid residues of an amino
acid sequence of a tumor antigen peptide of the present invention, and
which has the properties as a tumor antigen peptide, that are to be
capable of binding to an HLA antigen and being recognized by CTL.
Accordingly, all altered peptides fall within the scope of tumor antigen
peptide of the present invention so long as they contains alteration of
one or more amino acid residues of an amino acid sequence of a tumor
antigen peptide of the present invention, and have the properties as tumor
antigen peptides, that is, are capable of binding to HLA antigens and
being recognized by CTLs.
In this context, "alteration" of an amino acid residue means substitution,
deletion and/or addition (including addition of amino acids to the
N-terminus and/or the C-terminus of the peptide) of an amino acid residue,
with substitution of an amino acid residue being preferred. For
alterations involving substitution of an amino acid residue, although the
number and the position of amino acid residues to be substituted may be
determined arbitrarily so long as the activity as a tumor antigen peptide
is retained, it is preferred that one to several residues are substituted
in light of the fact that tumor antigen peptides are usually about 8 to 14
amino acids in length as described above.
A preferred length of tumor antigen peptide derivatives of the present
invention is about 8 to 14 amino acids as in case of the tumor antigen
peptide described above, although derivatives of 14 or more amino acids
long may also be possible for HLA-DR, -DP, and -DQ.
Such tumor antigen peptide derivatives of the present invention may be
identified by synthesizing altered peptides that contain alteration of a
part of a tumor antigen peptide of the present invention in accordance
with the above preparation of peptide, and by conducting the above assay
for tumor antigen peptides.
As described above, the sequence rules (motifs) for peptides that are
bound to and presented on HLA types such as HLA-A1, -A0201, -A0204,
-A0205, -A0206, -A0207, -A11, -A24, -A31, -A6801, -B7, -B8, -B2705, -B37,
-Cw0401, and -Cw0602 have been elucidated. As shown above, peptide
sequences expected to be capable of binding to HLA antigens may be further
searched on internet using the internet using the BIMAS software of NIH.
Consequently, tumor antigen peptide derivatives containing the alteration
of the amino acids in a tumor antigen peptide of the present invention can
be prepared on the basis of such motifs.
For example, regarding the motif for antigen peptides that are bound to
and presented on HLA-A24, it is known as described above that in the
sequence of a peptide consisting of 8 to 11 amino acids, the amino acid at
position 2 is tyrosine, phenylalanine, methionine, or tryptophan, and the
amino acid at the C-terminus is phenylalanine, leucine, isoleucine,
tryptophan, or methionine (J. Immunol., 152:3913, 1994; Immunogenetics,
41:178, 1995; J. Immunol., 155:4307, 1994). Likewise, the motifs shown in
the above Table 1 are known for HLA-A2. In addition, peptide sequences
expected to be capable of binding to HLA antigens are laid open on the
internet (BIMAS software from NIH), and amino acid residues having
properties similar to those of amino acids according to the motifs may
also be possible. Accordingly, examples of tumor antigen peptide
derivatives of the present invention include those peptide derivatives
that comprise all or part of an amino acid sequence of the tumor antigen
peptide of the present invention in which one or more amino acid residues
at any positions that may be allowed for substitution according to the
motifs (for HLA-A24 and HLA-A2, position 2 and the C-terminus) are
substituted by other amino acids (preferably, which is the amino acid
expected to be capable of binding to the antigens according to the above
internet), and which derivatives have activity of binding to HLA antigens
and being recognized by CTLs. Preferred examples are those tumor antigen
peptide derivatives that comprise all or part of an amino acid sequence in
which amino acid residues to be substituted are selected from those at
said positions according to the above motifs, and which derivatives have
the above activity. A preferred length of "all or part" of an amino acid
sequence is about 8 to 14 amino acids, although it may be a length of 14
or more amino acids for HLA-DR, -DP, and -DQ.
Examples of HLA-A24- or HLA-A2-restricted tumor antigen peptide
derivatives include those peptide derivatives that comprise all or part of
an amino acid sequence in which one or more amino acid residues at
positions that are allowed for substitution according to the above motifs,
specifically, at position 2 and/or the C-terminus, of a peptide derived
from the amino acid sequence of SART-3 having a binding motif for HLA-A24
or HLA-A2 are substituted by other amino acid residues (preferably, which
is the amino acid expected to be capable of binding to the antigens
according to the above internet), and which derivatives have the above
activity. Preferred examples are those tumor antigen peptide derivatives
that comprise all or part of an amino acid sequence in which the amino
acid residues at position 2 and/or the C-terminus are substituted by the
amino acid residues involved according to the above motifs, and which
derivatives have the above activity. In such HLA-A24- or HLA-A2-restricted
tumor antigen peptide derivatives, a preferred length of "all or part" of
the amino acid sequence is about 8 to 11 amino acids.
In particular, examples are those tumor antigen peptide derivatives that
comprise all or part of an amino acid sequence in which the amino acid
residues at position 2 and/or the C-terminus of an amino acid sequence
shown in any one of SEQ ID NOs: 3 to 52 are substituted by other amino
acid residues (preferably, which is the amino acid expected to be capable
of binding to the antigens according to internet as shown above) and which
derivatives have the above activity. Preferred examples are those tumor
antigen peptide derivatives that comprise all or part of an amino acid
sequence in which the amino acid residues at position 2 and/or the
C-terminus of an amino acid sequence shown in any one of SEQ ID NOs: 3 to
52 are substituted by the amino acid residues involved according to the
above motifs and which derivatives have the above activity. Specifically,
examples of HLA-A24-restricted tumor antigen derivatives are those tumor
antigen peptide derivatives that comprise all or part of an amino acid
sequence in which the amino acid residue at position 2 of an amino acid
sequence shown in any one of SEQ ID NOs: 3 to 24 is substituted by
tyrosine, phenylalanine, methionine, or tryptophan and/or the amino acid
residue at the C-terminus is substituted by phenylalanine, leucine,
isoleucine, tryptophan, or methionine and which derivatives have the above
activity. Likewise, examples of HLA-A2-restricted tumor antigen
derivatives are those tumor antigen peptide derivatives that comprise all
or part of an amino acid sequence in which the amino acid residue at
position 2 of an amino acid sequence shown in any one of SEQ ID NOs: 25 to
52 is substituted by leucine, methionine, valine, isoleucine, or
glutamine, and/or the amino acid residue at the C-terminus is substituted
by valine or leucine and which derivatives have the above activity.
Suitable examples of HLA-A24-restricted tumor antigen peptide derivatives
of the present invention are those tumor antigen peptide derivatives that
comprise all or part of an amino acid sequence in which the amino acid
residues at position 2 and/or the C-terminus of the amino acid sequence
shown in any one of SEQ ID NOs: 3 to 9 are substituted by other amino acid
residues and which derivatives have the above activity. More preferred
examples are those tumor antigen peptide derivatives comprise all or part
of an amino acid sequence in which the amino acid residue at position 2 of
an amino acid sequence shown in any one of SEQ ID NOs: 3 to 9 is
substituted by tyrosine, phenylalanine, methionine, or tryptophan and/or
the amino acid residue at the C-terminus is substituted by phenylalanine,
leucine, isoleucine, tryptophan, or methionine and which derivatives have
the above activity. Suitable examples of such tumor antigen peptide
derivatives are shown in SEQ ID NOs: 53 to 59.
Suitable examples of HLA-A2-restricted tumor antigen peptide derivatives
of the present invention are those tumor antigen peptide derivatives that
comprise all or part of an amino acid sequence in which the amino acid
residues at position 2 and/or the C-terminus of the amino acid sequence
shown in any one of SEQ ID NOs: 25 to 29 are substituted by other amino
acid residues and which derivatives have the above activity. More
preferred examples are those tumor antigen peptide derivatives comprise
all or part of an amino acid sequence in which the amino acid residue at
position 2 of an amino acid sequence shown in any one of SEQ ID NOs: 25 to
29 is substituted by leucine, methionine, valine, isoleucine, or
glutamine, and/or the amino acid residue at the C-terminus is substituted
by valine or leucine, and which derivatives have the above activity.
Suitable examples of such tumor antigen peptide derivatives are shown in
SEQ ID NOs: 60 to 64.
A tumor antigen peptide or its derivative of the present invention can be
used solely or together with other one or more of them as a pharmaceutical
composition for treating or preventing tumors. Namely, the present
invention provides a pharmaceutical composition for treatment or
prevention for tumors, which comprises the tumor antigen peptides or
derivatives thereof as an active ingredient. When the composition for
treating or preventing tumors which comprises as an active ingredient a
tumor antigen peptide or its derivative of the present invention is
administered to a SART-3-positive patient, the tumor antigen peptide or
derivative thereof is presented with an HLA antigen of antigen-presenting
cells, and therefore, CTLs specific for the presented HLA antigen complex
proliferates and destroys the tumor cells. As a result, the tumor of the
patient may be treated, or proliferation or metastasis of the tumor may be
prevented. SART-3 is developed extensively on the squamous cell carcinoma
such as esophageal cancer, and therefore, the composition for treating or
preventing tumors according to the present invention is advantageous in
terms of wide applicability. The squamous cell carcinoma often exhibits a
resistance to chemotherapy and radiotherapy, and, therefore, the
composition for treating tumors of the present invention also can achieve
an increased therapeutic effect by its combined use.
The composition for treating or preventing tumors comprising as an active
ingredient a tumor antigen peptide or its derivative of the present
invention may be administered together with an adjuvant in order to
effectively establish the cellular immunity, or may be administered in a
particulate dosage form. For such purpose, those adjuvants described in
the literature (Clin. Microbiol. Rev., 7:277-289, 1994) are applicable. In
addition, liposomal preparations, particulate preparations in which the
ingredient is bound to beads having a diameter of several .mu.m, or
preparations in which the ingredient is attached to lipids are also
possible. Administration may be achieved, for example, intradermally,
hypodermically, or by intravenous injection. Although the amount of a
tumor antigen peptide or its derivative of the present invention in the
formulation to be administered may be adjusted as appropriate depending
on, for example, the disease to be treated, the age and the body weight of
the particular patient, it is typical to administer 0.0001 mg to 1000 mg,
preferably 0.001 mg to 100 mg, and more preferably 0.01 mg to 10 mg every
several days to every several months.
Furthermore, a recombinant DNA that contains at least one DNA encoding a
tumor antigen peptide or its derivative of the present invention, or a
recombinant polypeptide obtainable by expression of said recombinant DNA
may be also comprised as an active ingredient in the composition for
treating or preventing tumors according to the present invention, which
details are provided below.
In this connection, the term "recombinant DNA" refers to any DNA encoding
a partial polypeptide, a partial peptide consisting of a part of the tumor
antigen protein of the present invention, derivatives thereof, polytope in
which such peptides are combined, or the like. All DNAs fall within the
scope of recombinant DNA of the present invention so long as they contain
at least one DNA encoding the tumor antigen peptide or its derivative of
the present invention. Such recombinant DNA may be incorporated into a
suitable expression vector to make an active ingredient comprised in the
pharmaceutical composition for treating or preventing tumors.
The term "polytope" refers to a combined peptide of many CTL epitopes, and
DNAs encoding such polytopes have recently been used for DNA vaccination.
See, for example, J. of Immunology, 160, p 1717, 1998. DNA encoding the
polytope of the present invention can be prepared by ligating one or more
DNAs encoding the tumor antigen peptide or its derivative of the present
invention each other, and, if desired, ligating a DNA encoding other tumor
antigen peptide(s).
Recombinant DNA of the present invention can be easily prepared according
to typical DNA synthesis and genetic engineering method, for example,
according to the description of a standard text such as "Molecular
Cloning", 2nd ed., Cold Spring Harbor Laboratory Press (1989).
Incorporation of such recombinant DNA into expression vectors may be also
conducted according to the standard text and the like.
Determination whether or not a recombinant DNA of the present invention as
prepared above may generate tumor antigen peptides that are capable of
binding to HLA antigens and being recognized by CTLs may be achieved in
accordance with, for example, the method as mentioned above for
determining the activity of DNA of the present invention. Likewise, a
method for using the present recombinant DNA as medicaments or
prophylactics may be in accordance with the method for the DNA of the
present invention.
As shown above, "recombinant polypeptide" obtainable by expression of the
recombinant DNA of the invention may also be used for a pharmaceutical
composition for treating or preventing tumors.
The recombinant polypeptide of the invention may be prepared in a similar
manner to that for the protein of the invention as described above.
Likewise, determination whether or not a recombinant polypeptide of the
present invention as prepared above may have certain activity may be
achieved in accordance with a similar manner to that for the protein of
the present invention. Further, a method for using the present recombinant
polypeptide as medicaments or prophylactics may be in accordance with the
above method for the protein or peptide of the present invention.
The present invention also provides antibodies that specifically bind to a
protein of the present invention, a tumor antigen peptide of the present
invention or a derivative thereof. Such antibodies are easily prepared,
for example, according to a method described in "Antibodies: A Laboratory
Manual", Lane, H. D. et al. eds., Cold Spring Harbor Laboratory Press, New
York, 1989. Specifically, antibodies that recognize a tumor antigen
peptide or its derivative of the present invention and antibodies that
further neutralize its activity may easily be prepared using the tumor
antigen peptide or derivative thereof to appropriately immunize an animal
in the usual manner. Such antibodies may be used in affinity
chromatography, immunological diagnosis, and the like. Immunological
diagnosis may be selected as appropriate from immunoblotting,
radioimmunoassay (RIA), enzyme-linked immunosorbent assay (ELISA), a
fluorescent or luminescent assay, and the like.
A tumor antigen peptide, derivative thereof, tumor antigen protein, gene
therefor of the present invention, or a recombinant DNA or recombinant
polypeptide of the present invention may also be used in vitro for
treatment of tumor patients as follows.
On usage of a tumor antigen peptide, derivative thereof, tumor antigen
protein, or gene therefor in treatment of tumors, it is important to
establish an administration method which can efficiently induce specific
CTLs in the body of a patient. As one of the means therefor, the present
invention provides an antigen-presenting cell in which a complex between
an HLA antigen and a tumor antigen peptide or its derivative of the
present invention is presented on the surface of a cell having
antigen-presenting ability isolated from a tumor patient, and also
provides a pharmaceutical composition for treating tumors, which comprises
said antigen-presenting cell as an active ingredient.
In this context, the "cell having antigen-presenting ability" is not
limited to a specific cell so long as it is a cell expressing on its cell
surface an HLA antigen allowing a tumor antigen peptide or its derivative
of the present invention to be presented, and dendritic cells, which is
reported to have especially a high antigen-presenting ability, are
preferred.
Substances to be added to prepare an antigen-presenting cell of the
present invention from the above-mentioned cell having an
antigen-presenting ability may be tumor antigen peptides or their
derivatives of the present invention, as well as DNAs, proteins,
recombinant DNAs or recombinant polypeptides of the present invention.
When used in the form of a protein or DNA, it is necessarily introduced
into cells.
In order to prepare antigen-presenting cells of the present invention,
cells having an antigen-presenting ability are isolated from a tumor
patient, and pulsed ex vivo with a tumor antigen peptide, a derivative
thereof, a tumor antigen protein, or recombinant polypeptide of the
present invention to present a complex between an HLA antigen and said
tumor antigen peptide or derivative thereof (Cancer Immunol. Immunother.,
46:82, 1998; J. Immunol. 158: p 1796, 1997; Cancer Res., 59:1184, 1999).
When dendritic cells are used, antigen-presenting cells of the present
invention may be prepared, for example, by isolating lymphocytes from
peripheral blood of a tumor patient using Ficoll method, removing
non-adherent cells, incubating the adherent cells in the presence of GM-CSF
and IL-4 to induce dendritic cells, and incubating and pulsing said
dendritic cells with a tumor antigen peptide or tumor antigen protein of
the present invention, or the like.
When antigen-presenting cells of the present invention are prepared by
introducing a DNA or a recombinant DNA of the present invention into the
aforementioned cells having an antigen-presenting ability, said gene may
be in the form of DNA or RNA. In particular, DNA may be used consulting,
for example, Cancer Res., 56:5672, 1996 or J. Immunol., 161: p 5607, 1998,
and RNA may be used by consulting, for example, J. Exp. Med., 184: p 465,
1996.
A pharmaceutical composition for treating tumors which comprises the above
antigen-presenting cells as an active ingredient preferably contains
physiological saline, phosphate buffered saline (PBS), medium, or the like
to stably maintain the antigen-presenting cells. It may be administered,
for example, intravenously, subcutaneously, or intradermally. By
reintroducing such composition for treating tumors which comprises
antigen-presenting cells as an active ingredient into the body of the
patient, specific CTLs are efficiently induced in SART-3-positive patient
so as to achieve treatment of the tumor. It should be undisputed that the
HLA types need be compatible between the patient and the peptide used,
such that an HLA-A24-restricted tumor antigen peptide or a derivative
thereof must be used with an HLA-A24-positive tumor patient.
In addition, in vitro use of a tumor antigen peptide, a derivative
thereof, a tumor antigen protein, a DNA therefor a recombinant DNA or
recombinant polypeptide according to the present invention in the
following adoptive immunotherapy may be provided as another example of
their use.
For melanomas, it has been observed that an adoptive immunotherapy wherein
tumor-infiltrating T cells taken from the patient himself/herself are
cultured ex vivo in large quantities, and then returned into the patient,
achieves a therapeutic effect (J. Natl. Cancer. Inst., 86:1159, 1994).
Likewise, in mouse melanoma, suppression of metastasis has been observed
by in vitro stimulation of splenocytes with tumor antigen peptide TRP-2,
thereby proliferating CTLs specific for the tumor antigen peptide, and
administering said CTLs into a melanoma-grafted mouse (J. Exp. Med.,
185:453, 1997). This resulted from in vitro proliferation of CTLs that
specifically recognize the complex between an HLA antigen of
antigen-presenting cells and the tumor antigen peptide. Accordingly, a
method for treating tumors is believed to be useful, which comprises
stimulating in vitro peripheral blood lymphocytes from a patient using a
tumor antigen peptide, a derivative thereof, a tumor antigen protein, or a
DNA therefor according to the present invention to proliferate
tumor-specific CTLs, and subsequently returning the CTLs into the patient.
Thus, the present invention provides CTLs that specifically recognize a
complex between the HLA antigen and the tumor antigen peptide or
derivative thereof, and also provides a pharmaceutical composition for
treating tumors which comprises said CTLs as an active ingredient. Such
composition preferably contains physiological saline, phosphate buffered
saline (PBS), medium, or the like to stably maintain CTLs. It may be
administered, for example, intravenously, subcutaneously, or intradermally.
By reintroducing the composition for treating tumors which comprises CTLs
as an active ingredient into the body of the patient, the toxic effect of
CTLs against the tumor cells is enhanced in SART-3-positive patient and
thereby destroys the tumor cells to achieve treatment of the tumor.
Tumor antigen peptides, derivatives thereof, tumor antigen proteins, or
recombinant polypeptide thereof according to the present invention may be
also used as an active ingredient of a diagnostic agent for diagnosing
tumors. Specifically, by using a tumor antigen peptide, or derivative
thereof according to the present invention itself as a diagnostic agent to
detect the presence of antibodies in a sample (such as blood or a tumor
tissue) obtained from a patient suspected to have a tumor, early detection
of tumors and diagnosis of recurrence and metastasis are possible. The
same procedure can also be used for selection of tumor patients to whom
medicaments comprising as an active ingredient, for example, a tumor
antigen peptide of the present invention can be applied. In particular,
such diagnosis may be conducted using immunoblotting, RIA, ELISA, or a
fluorescent or luminescent assay.
Furthermore, in recent years, a new detection method has been established
for detecting antigen-specific CTLs using a complex between the antigen
peptide and an HLA antigen (Science, 274:94, 1996). Early detection of
tumors and diagnosis of reoccurrence or metastasis are possible by
applying a complex between a tumor antigen peptide or derivative thereof
according to the present invention and an HLA antigen to the above
detection method, and thereby detecting tumor antigen-specific CTLs. The
same procedure can also be used for selection of tumor patients to whom a
medicine comprising as an active ingredient, for example, a tumor antigen
peptide of the present invention can be applied, or for determination of
the therapeutic effect of said medicament. Thus, the present invention
also provides a diagnostic agent for tumors comprising a tumor antigen
peptide or derivative thereof according to the present invention.
In particular, such diagnosis may be conducted by preparing a tetramer of
a complex between an HLA antigen fluorescently labeled according to the
method described in the literature (Science, 274:94, 1996) and a tumor
antigen peptide, and using it to quantitatively determine the antigen
peptide-specific CTLs in peripheral blood lymphocytes of a patient
suspected to have a tumor using a flow cytometer.
The present invention also provides OK-CTL (deposit number FERM BP-6818)
that is CTL established from tumor-infiltrating lymphocytes derived from
colon cancer, OK-CTL has proved to be HLA-A2-restricted. Accordingly,
tumor antigen proteins and HLA-A2-restricted tumor antigen peptides may be
newly found by using OK-CTL.
Claim 1 of 6 Claims
1. An isolated peptide consisting of
amino acid sequence of SEQ ID NO: 28.
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